Sequence
atgc intronic sequence ATGC exonic sequence...tgcacctacatggtttatatttgtatatttatgaatgcaatgctaaaaatgaagataaagaaacagtgatgatccaaccttcctctatatctaattgcagGAGGTAATGGTGCCACCGGAGCAATAGCTGGAGGAGTTGCTGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAG
Basic information
species | Glycine max |
transcript | GLYMA20G31320.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G31320.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G115420_T01 (Zea mays), 3'ss of exon 7
tgcacctacatggtttatatttgtatatttatgaatgcaatgctaaaaatgaagataaagaaacagtgatgatccaaccttcctctatatctaattgc-agGAGGTAATGGTGCCACCGGAGCAATAGCTGGAGGAGTTGCTGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAG---
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---------gtaggttttgaatctacttttatt--ttcattaatacac-taaaactttagcattttggatgacacgtacttcctggatttatgtctactattagGTGCTTCTAGCACTGGAGCAATAGCTGGAGGTGTTGCTGCTGGTGCAGCATTGGTGTTTGCTGTTCCTGCAATTGCATTTGCAATGTGGCGCCGTCGTAA
upper sequence: GLYMA20G31320.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G150024_T03 (Zea mays), 3'ss of exon 7
tgcacctacatggtttatatttgtatat-ttatgaatgcaatgctaaaaatgaaga--taaagaaacagtgatgatccaaccttcctctatatctaattgcagGAGGTAATGGTGCCACCGGAGCAATAGCTGGAGGAGTTGCTGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAG---
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-----gtaggtttttta-atctatttctattctcattactacactaaaactttagcattctggatgacacattgacactacttcctggattgtctactattagGTGCTTCTGG---CCCTGGAGCAATCGCTGGAGGTGTTGCTGCTGGTGCTGCATTGGTTTTTGCTGTTCCAGCAATTGCATTTGCAATGTGGCGCCGTCGTAA
upper sequence: GLYMA20G31320.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv18s0164g00070.t01 (Vitis vinifera), 3'ss of exon 7
-tgcacctacatggtttatatttgt-atatttatgaatgcaatgctaaaaatgaagataaagaa-acagtgatgatccaaccttcctctatatctaattgcagGAGGTAATGGTGCCACCGGAGCAATAGCTGGAGGAGTTGCTGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAG
| | | | | | | | | | | |||||| ||| | | | || || | ||| | || || || || | | ||| ||||||| || ||||||| |||||||| ||||| || || ||||||||||||||| || |||||||||| |||||||||| ||||| |||||||| |||||
agaaaagaaaaagactggtttctcttacagttatgacagcattctttagaagagttatcatccttgcaggattattctaatctctctttcaac---atttcagGAGGGAACAGTGCCACAGGAGCAATTGCTGGGGGTGTGGCTGCTGGTGCTGCTTTACTATTTGCTGCTCCTGCAATTGGTTTTGCATGGTGGCGCCGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaatgaagataaagaaacagtgatgatccaaccttcctctatatctaattgcagGAGGTAATGGTGCCACCGGAGCAATAGCTGGAGGAGTTGCTGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAG
ccttcctctatatct CT-rich tract
tatatctaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgcacctacatggtttatatttgtatatttatgaatgcaatgctaaaaatgaagataaagaaacagtgatgatccaaccttcctctatatctaattgcagGAGGTAATGGTGCCACCGGAGCAATAGCTGGAGGAGTTGCTGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- cacctac
- - - - - - - - - - - - - - - - gaatgca
- - - - - - - - - - - - - - - - - - - - - - - -aatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtgatg