Sequence
atgc intronic sequence ATGC exonic sequence...aacaattgtaaagtttttggcagatgatgattttaataatattgatttaaatatctttagtctttttatatctttttttgtttattgttttacataatagGGAACTCTACAGCAATAACATTACTGGCCCTATTCCAAGTGACCTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTAAATCATTTCACTGGC
Basic information
species | Glycine max |
transcript | GLYMA20G31320.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G31320.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G384439_T02 (Zea mays), 3'ss of exon 3
aacaattgtaaagtttttggcagatgatgattttaataatattgatttaaatatctttagtcttttta---tatctttttttgtttattgttttacataatagGGAACTCTACAGCAATAACATTACTGGCCCTATTCCAAGTGACCTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTAAATCATTTCACTGGC
|| | | | | | || | | ||| || | | ||||| || ||| | || | | ||| || || | ||||| |||||||| ||||| || | |||| |||| || ||||| || ||||||||||| |||||||| || |||||| ||||| | || | ||||||||
-tcactaatgacctcaaccatttactgtggcatgccatagcttggtt--actttcttttgtttttaaaattagtcactgccttcatatcgtgtttttatacagGGAGCTCTACAGTAATAATATCAGTGGCACTATACCTAGTGAACTTGGGAATCTTACAAACTTGGTCAGTTTGGATTTGTACTTGAACAACTTCACTGGT
upper sequence: GLYMA20G31320.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0164g00070.t01 (Vitis vinifera), 3'ss of exon 3
aacaatt--gtaaagtttttggcagatgatgattttaataatattgatttaaatatctttagtctttttatatctttttttgtttattgttttac--ataatagGGAACTCTACAGCAATAACATTACTGGCCCTATTCCAAGTGACCTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTAAATCATTTCACTGGC
| |||| | | || | | |||| ||| || || | | | || | || |||| | | || | ||| || || | ||||| |||||||| |||||||| | ||| || ||||| |||||||| |||||||| |||| |||||||||||||||||| || | || ||| |||||
-agaatttggccagattctaatcttgtgattgctttcttag-atgtact--atcattgtggatccttttgtgcttaaattattaaattaacttgtctatgacagGGAGCTCTACAGTAATAACATAAGTGGACCAATTCCTAGTGACCTTGGGAATCTAACTAGCTTGGTGAGCTTGGATCTTTATTTGAACAGTTTTACTGGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttaaatatctttagtctttttatatctttttttgtttattgttttacataatagGGAACTCTACAGCAATAACATTACTGGCCCTATTCCAAGTGACCTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTAAATCATTTCACTGGC
tctttttttgtttatt CT-rich tract
tctttttatatctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aacaattgtaaagtttttggcagatgatgattttaataatattgatttaaatatctttagtctttttatatctttttttgtttattgttttacataatagGGAACTCTACAGCAATAACATTACTGGCCCTATTCCAAGTGACCTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTAAATCATTTCACTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - -gcagatg