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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTTAATCCATGTACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagttgcttgttccttgatatctgtcacatgttcattctgtctgaacggcttcttttaattgaggatgacttctctaacgtttgcttgtgatctttactttgcttggttgtcag

Basic information

species Glycine max
transcript GLYMA20G31320.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31320.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os04g38480.1 (Oryza sativa), 5'ss of exon 2
AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTTAATCCATGTACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagttgcttgttccttgatatctgtcacatgttcattctgtctgaacggcttcttttaattgag-gatgacttctctaacgtttgcttgtgatctttactttgcttggttgtcag
| ||| | ||||||||  |||| ||||||||||| || || || |||||||| |||||||| |||||||| || |||  ||| || || || || ||||||||||||  |       |  ||||  |   | | |  |      | |      |  |    ||| | | |||||  ||||   |    | |                          
AAGATGCTAACAATGTGCTGCAGAGTTGGGATCCCACTCTGGTCAATCCATGCACATGGTTCCATGTAACTTGTAACCCTGACAACAGCGTGATCAGAGTgtaagtttttgacagaat--tatcatttttaggcttgtcaaaagtaagaaatgtgatcattttgtgtgttgactgatctattttcctttcgcag-----------------------

upper sequence: GLYMA20G31320.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G115420_T01 (Zea mays), 5'ss of exon 2
AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTTAATCCATGTACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagttgcttgttccttgatatctgtcacatgttcattct----gtctgaacggcttcttttaattgaggatgacttctctaacgtttgcttgtgatctttactttgcttggttgtcag
| ||| | |||||||| ||||| ||||||||||| || ||||||||||||||||||||||| ||||| || || ||||| ||||| ||||| || ||||||||||||| |         | | || ||| || ||| |       || | || |   |  |   | ||    | | |   |   | ||  |                             
AAGATGCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTTGTTAATCCATGTACATGGTTCCATGTTACGTGTAACAACGATAACAGTGTTATCAGAGTgtaagttgatgaa-----aaaagctctcatatattcgtatcaaaagtgttaatgatgttctcctactggttctaagtgtaccccctttcacag---------------------------

upper sequence: GLYMA20G31320.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G150024_T03 (Zea mays), 5'ss of exon 2
AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTTAATCCATGTACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagttgcttgttccttgatatctgtcacatgttcattct---gtctgaacggcttcttttaattgaggatgacttctctaacgtttgcttgtgatctttactttgcttggttgtcag
  ||| | |||||||| ||||| ||||||||| | || |||||||||||||||||||||||||| || || || ||||  ||||| ||||| || ||||||||||| | |         | | || ||| || ||||||     || | |  |   |  |     ||    | | |   |  || ||  |                             
TAGATACGAACAATGTCTTGCAGAGTTGGGATTCCACTCTTGTTAATCCATGTACATGGTTTCACGTTACGTGTAACAGCGATAACAGTGTTATCAGAGTgtaagtcgatga------aaaagctctcatatattcatttcaaagtgttagtgatgttctccttctggttctaaatgtccccactttcacag---------------------------

upper sequence: GLYMA20G31320.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G870959_T01 (Zea mays), 5'ss of exon 2
AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTTAATCCATGTACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagttgcttgttccttgatatctgtcacatgttcattctgtc-tgaacggcttcttttaattgaggatgacttctctaacgtttgcttgtgatctttactttgcttggttgtcag
| |||  |||||| ||  |||| ||||||||||| || || |||||||||||||||||||| ||||| || || |||  |||||| |||||||| ||| ||||||||| |         ||||||    |||  ||  |  |   |||| | ||     |  ||||  ||    | | |  | |||||| |                          
AAGATAACAACAACGTGCTGCAGAGTTGGGATCCAACTCTGGTTAATCCATGTACATGGTTCCATGTTACTTGTAACCCTGATAACAGTGTCATCAGACTgtaagttgatca------aatatcttgttcattctcccttggaggtgaaagactgaccat--ttgaatattgtctgtttcccttttgctag--------------------------

upper sequence: GLYMA20G31320.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G384439_T02 (Zea mays), 5'ss of exon 2
AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTTAATCCATGTACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagtt-gcttgttccttga-tatctgtcacatgttcattctgtctgaacggcttcttttaattgaggatgacttctctaacgtttgcttgtgatctttactttgcttggttgtcag
| ||||| || |||||| | |||||||||||||| || || || || || || || ||||||||||| || ||||| ||||| || ||||| || |||||||| |||  | | |||||  | ||| | |||   ||   ||     |   | |  | |  || |  | |     || |    | |||||                             
ATGATCCTAATAATGTTCTACAAAGTTGGGATCCCACTCTGGTCAACCCCTGCACTTGGTTTCATGTTACCTGCAATAATGACAACAGTGTTATCAGAGTgtaggttcaccttttcctccactatatttcatcagtgagttgcacatattctgtgtttcgtactgaaag-----tttttcctcatttgcag---------------------------

upper sequence: GLYMA20G31320.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 2
AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTTAATCCATGTACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagttgcttgttccttgatatctgtcacatgttcattctgtctgaacggcttcttttaattgaggatgacttctctaacgtttgcttgtgatctttactttgcttggttgtcag--
|||| || ||||||||  | || ||||||||||| || ||||| || || || |||||||||||||| || ||||| | |||||||||||| |||||||||||||  |||| | |||| |||  | |  ||| | |    || || |  |     | | |||||    |||    |  ||||      | |||| ||   ||   |   || |||   
AGGACCCAAACAATGTCCTACAGAGTTGGGATCCGACCCTTGTCAACCCCTGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGTgtaagcagctt-tcccttcatacgtcttccatttac----tggctcagtgtaacttgtgaattgct--tgatccatgaaacgccc-tgtatgatgttgctttccatatattttcacag