Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298173741|gb|HO017077.1|HO017077EST: AATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGGTCTGG AAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTC
genomic: AATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGGTCTGGgtaagcgtta ... attgttgcagAAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTC
EST:
gi|31307814|gb|CD393017.1|CD393017EST: AATGCAAACCTTCAATATTCAAACCAAGCCATTTTGGCTTTAGGGTCTGG AAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTC
genomic: AATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGGTCTGGgtaagcgtta ... attgttgcagAAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTC
EST:
gi|19268669|gb|BM884925.1|BM884925EST: AATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGGTCTGG AAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTC
genomic: AATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGGTCTGGgtaagcgtta ... attgttgcagAAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTC
EST:
gi|120494890|gb|EH223057.1|EH223057EST: AAACCAAGCAATTTTGGCTTTAGGGTCTGG AAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTC
genomic: AAACCAAGCAATTTTGGCTTTAGGGTCTGGgtaagcgtta ... attgttgcagAAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTC
EST:
gi|23056828|gb|BU577800.1|BU577800EST: AATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGGTCTGG AAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTC
genomic: AATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGGTCTGGgtaagcgtta ... attgttgcagAAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTC
EST:
gi|151401549|gb|EV271363.1|EV271363EST: AATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGGTCTGG AAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTC
genomic: AATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGGTCTGGgtaagcgtta ... attgttgcagAAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgcaaaataccatgttagttagctcagtctaatttgagattttaattgttgcagAAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTCATGCAATGTTGCTCATGCTACACAGAAGTTGGAGCTTCTGCTGGCATAA
ttttaat putative branch site (score: 3)
taatttgagattttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagatttcaatgattcctttcccttcgcgtgtattttcttccacactgcaaaataccatgttagttagctcagtctaatttgagattttaattgttgcagAAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTCATGCAATGTTGCTCATGCTACACAGAAGTTGGAGCTTCTGCTGGCATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT