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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattcaactctcctatgctttccgttctatcaaagtccgcttcacacttgttgtttcaattttccaatcttgtagGACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGGTCTGG

Basic information

species Glycine max
transcript GLYMA20G31230.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298173741|gb|HO017077.1|HO017077
EST:     ATCTTATCTTCTGAATCTAAACACTTTTCGTGTTCATGCGGGAATCAGTG                         GACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGG
genomic: ATCTTATCTTCTGAATCTAAACACTTTTCGTGTTCATGCGGGAATCAGTGgtaagtattc ... aatcttgtagGACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGG
EST: gi|31307814|gb|CD393017.1|CD393017
EST:     TAAACACTTTTCGTGTTCATGCGGGAATCAGTG                         GACGGCAATGCAAACCTTCAATATTCAAACCAAGCCATTTTGGCTTTAGGG
genomic: TAAACACTTTTCGTGTTCATGCGGGAATCAGTGgtaagtattc ... aatcttgtagGACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGG
EST: gi|19268669|gb|BM884925.1|BM884925
EST:     ATCTTATCTTCTGAATCTAAACACTTTTCGTGTTCATGCGGGAATCAGTG                         GACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGG
genomic: ATCTTATCTTCTGAATCTAAACACTTTTCGTGTTCATGCGGGAATCAGTGgtaagtattc ... aatcttgtagGACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGG
EST: gi|23056828|gb|BU577800.1|BU577800
EST:     CTTATCTTCTGAATCTAAACACTTTTCGTGTTCATGCGGGAATCAGTG                         GACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGG
genomic: CTTATCTTCTGAATCTAAACACTTTTCGTGTTCATGCGGGAATCAGTGgtaagtattc ... aatcttgtagGACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGG
EST: gi|151401549|gb|EV271363.1|EV271363
EST:     ATCTTATCTTCTGAATCTAAACACTTTTCGTGTTCATGCGGGAATCAGTG                         GACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGG
genomic: ATCTTATCTTCTGAATCTAAACACTTTTCGTGTTCATGCGGGAATCAGTGgtaagtattc ... aatcttgtagGACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgttctatcaaagtccgcttcacacttgttgtttcaattttccaatcttgtagGACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGGTCTGG
                                       ttttcca  CT-rich tract
                                 tttcaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtattcaactctcctatgctttccgttctatcaaagtccgcttcacacttgttgtttcaattttccaatcttgtagGACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGGTCTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA