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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGCGGGCACCGTGAAGTTCCTGAAGCATAAGGCTACGGGCAAGGTTAGGCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCAgtatgtgctttcttttcttcttcggttttgcgtctgtttttgtcttagaattttgattttgagatttttgtttttttgttctcgattgttgcag

Basic information

species Glycine max
transcript GLYMA20G31070.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31070.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g18180.1 (Oryza sativa), 5'ss of exon 2
GGCGCGGGCACCGTGAAGTTCCTGAAGCATAAGGCTACGGGCAAGGTTAGGCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCAgtatgtgctttcttttcttcttcggttttgcgtctgtttttgtcttagaattttgattt-tgagatttttgtttttttgttctcgattgt---tgcag
||| | ||||| |||||| | |||||||| ||||  || ||||||||  | ||  ||||| | ||  | |||||||||||||||||||||||||| ||| ||||    | | |       |    |||||    || ||| |   | || |   |||   || | ||    ||   | | |   | ||||   |||||
GGCACCGGCACGGTGAAGCTGCTGAAGCACAAGGAGACCGGCAAGGTCCGTCTCGTCATGCGCCAGGCTAAGACGCTCAAGATCTGCGCCAATCACCTCGgtatccaatctttgcggggatc---ttttgttgttggtttcgatctggattccagatggatggggttcgacttgactgggtgatgtttgtgtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254339434|gb|GR848192.1|GR848192
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCA                         TTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
EST: gi|151396243|gb|EV266120.1|EV266120
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCA                         TTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
EST: gi|192333111|gb|FK026440.1|FK026440
EST:     GATCTGCGCCAATCATCTCA                         TTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
genomic: GATCTGCGCCAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
EST: gi|23727133|gb|BU761585.1|BU761585
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCA                         TTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
EST: gi|193482815|gb|FK446598.1|FK446598
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCA                         TTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
EST: gi|298165930|gb|HO008901.1|HO008901
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCA                         TTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAGATCTTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
EST: gi|209718189|gb|BW657821.1|BW657821
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCA                         TTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
EST: gi|254337710|gb|GR845280.1|GR845280
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCA                         TTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
EST: gi|7030389|gb|AW460172.1|AW460172
EST:     GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCA                         TTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
EST: gi|254337711|gb|GR845281.1|GR845281
EST:     TCTGCGCCAATCATCTCA                         TTTTG-CTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG
genomic: TCTGCGCCAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCG