1 5' 3' | 2 5' 3' | 3 5' 3' |
GCGACGACGAGGACACCGGAGCACACGTCGCTCCCATCGTCAAGCTCGAGGAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTAGATCTgtaactctctttccttctctctattttctcctcttttgcttctcgattttactgttttgccactgatcggtgcggttgatgcttgttcctcgcggatcgcag
species | Glycine max |
transcript | GLYMA20G31070.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTAGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGATGGGAACCAGTGGAAGGAGCGEST: gi|23727133|gb|BU761585.1|BU761585
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTAGATCTgtaactctct ... cggatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGATGGGAACCAGTGGAAGGAGCG
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTAGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGATGGGAACCAGTGGAAGGAGCGEST: gi|298165930|gb|HO008901.1|HO008901
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTAGATCTgtaactctct ... cggatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGATGGGAACCAGTGGAAGGAGCG
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTAGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGATGGGAACCAGTGGAAGGAGCGEST: gi|254337710|gb|GR845280.1|GR845280
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTAGATCTgtaactctct ... cggatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGATGGGAACCAGTGGAAGGAGCG
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTAGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGATGGGAACCAGTGGAAGGAGCGEST: gi|7030389|gb|AW460172.1|AW460172
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTAGATCTgtaactctct ... cggatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGATGGGAACCAGTGGAAGGAGCG
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTAGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGATGGGAACCAGAGGAAGGAGCGEST: gi|208120847|gb|GD917562.1|GD917562
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTAGATCTgtaactctct ... cggatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGATGGGAACCAGTGGAAGGAGCG
EST: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTAGATCT CAAATCGAAGCTTTACCGGTTCGACAAGGATGGGAACCAGTGGAAGGAGCG
genomic: GAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTAGATCTgtaactctct ... cggatcgcagCAAATCGAAGCTTTACCGGTTCGACAAGGATGGGAACCAGTGGAAGGAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGACGACGAGGACACCGGAGCACACGTCGCTCCCATCGTCAAGCTCGAGGAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTAGATCTgtaactctctttccttctctctattttctcctcttttgcttctcgattttactgttttgccactgatcggtgcggttgatgcttgttcctcgcggatcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG