1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tattccttttatgtctggttggctggttgctttaattctgtatttacaagttctgtctaaaagaactacaatcacttaatcaattccaatttaattgtagGAGAATAATTTGGTTGGGTGATCTGAATTATCGTATCAACTTGTCATATGAGAAAACAAGAGATTTTATCTCAAAAAAGCAATGGTCCAAATTGATTGAG
species | Glycine max |
transcript | GLYMA20G31050.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTTATTCTCTTGCTGATATTGGAGTTCCTAGAAAGATCCTTGATCATGA GAGAATAATTTGGTTGGGTGATCTGAATTATCGTATCAACTTGTCATATGA
genomic: TTTTATTCTCTTGCTGATATTGGAGTTCCTAGAAAGATCCTTGATCATGAgtgagtgcat ... ttaattgtagGAGAATAATTTGGTTGGGTGATCTGAATTATCGTATCAACTTGTCATATGA
acaagttctgtctaaaagaactacaatcacttaatcaattccaatttaattgtagGAGAATAATTTGGTTGGGTGATCTGAATTATCGTATCAACTTGTCATATGAGAAAACAAGAGATTTTATCTCAAAAAAGCAATGGTCCAAATTGATTGAG
ttaatcaattccaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattccttttatgtctggttggctggttgctttaattctgtatttacaagttctgtctaaaagaactacaatcacttaatcaattccaatttaattgtagGAGAATAATTTGGTTGGGTGATCTGAATTATCGTATCAACTTGTCATATGAGAAAACAAGAGATTTTATCTCAAAAAAGCAATGGTCCAAATTGATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - -tggttgg
- - - - - - - - - - - -tggttgc
- - - - - - - - - - - - - - - - - -ttctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caattcc