1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tatggtttatgtcaaaatgatctgaaaatttagaattgagacgctgcaactccttttcagtttcgctatttctgtgatctgcctcaatttgaatatgcagAGTGGGGCAAACGGACACGGTTTGGGGACAGCAGAGAGGAACTAGCTCCAATTGAGTCAAATG
species | Glycine max |
transcript | GLYMA20G31050.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCTGATGATGATAATGAGGAGGACCCTGAAAGTGACTCAGATAATGAAG AGTGGGGCAAACGGACACGGTTTGGGGACAGCAGAGAGGAACTAGCTCCAAEST: gi|209712099|gb|BW676716.1|BW676716
genomic: CCCTGATGATGATAATGAGGAGGACCCTGAAAGTGACTCAGATAATGAAGgtgagtgttt ... gaatatgcagAGTGGGGCAAACGGACACGGTTTGGGGACAGCAGAGAGGAACTAGCTCCAA
EST: CCCTGATGATGATAATGAGGAGGACCCTGAAAGTGACTCAGATAATGAAG AGTGGGGCAAACGGACACGGTTTGGGGACAGCAGAGAGGAACTAGCTCCAA
genomic: CCCTGATGATGATAATGAGGAGGACCCTGAAAGTGACTCAGATAATGAAGgtgagtgttt ... gaatatgcagAGTGGGGCAAACGGACACGGTTTGGGGACAGCAGAGAGGAACTAGCTCCAA
gcaactccttttcagtttcgctatttctgtgatctgcctcaatttgaatatgcagAGTGGGGCAAACGGACACGGTTTGGGGACAGCAGAGAGGAACTAGCTCCAATTGAGTCAAATG
aatttgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatggtttatgtcaaaatgatctgaaaatttagaattgagacgctgcaactccttttcagtttcgctatttctgtgatctgcctcaatttgaatatgcagAGTGGGGCAAACGGACACGGTTTGGGGACAGCAGAGAGGAACTAGCTCCAATTGAGTCAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - acgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctca