1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTTTTCTAGGCACTACTACAGTTCTGTTACTGTCTTCTGCTTTGTCCAATTATTGCCATTTTAAACAGTGATGAAGCAAGGGTCAGCAAACAACCAACAGgtactgtttctctctctaccctgagcttgtgcatggcttctttttgcatgcttctgagaattggtgtcattggtattttggggtttgttgatcttgggaaactgaggcacagtgaaaatgacttgggctgaaatgtgctttttggtttgttgttgcatgcag
species | Glycine max |
transcript | GLYMA20G31050.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TATTGCCATTTTAAACAGTGATGAAGCAAGGGTCAGCAAACAACCAACAG CTCTTGTGGGCAAGAGTGGTTATGCGCAAATGGCTTAACATGGCCAGTAACEST: gi|209712099|gb|BW676716.1|BW676716
genomic: TATTGCCATTTTAAACAGTGATGAAGCAAGGGTCAGCAAACAACCAACAGgtactgtttc ... ttgcatgcagCTCTTGTGGGCAAGAGTGGTTATGCGCAAATGGCTTAACATGGCCAGTAAC
EST: TATTGCCATTTTAAACAGTGATGAAGCAAGGGTCAGCAAACAACCAACAG CTCTTGTGGGCAAGAGTGGTTATGCGCAAATGGCTTAACATGGCCAGTAAC
genomic: TATTGCCATTTTAAACAGTGATGAAGCAAGGGTCAGCAAACAACCAACAGgtactgtttc ... ttgcatgcagCTCTTGTGGGCAAGAGTGGTTATGCGCAAATGGCTTAACATGGCCAGTAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTTCTAGGCACTACTACAGTTCTGTTACTGTCTTCTGCTTTGTCCAATTATTGCCATTTTAAACAGTGATGAAGCAAGGGTCAGCAAACAACCAACAGgtactgtttctctctctaccctgagcttgtgcatggcttctttttgcatgcttctgagaattggtgtcattggtattttggggtttgttgatcttgggaaactgaggcacagtgaaaatgacttgggctgaaatgtgctttttggtttgttgttgcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG