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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATAAACCAAGCAATGCTAAAGTGAACCAGTTAGCGAAAGCTGCAGAAAAATACACTCTTGCAAACCATCTATTTTGGGGGTTGTGGGGACTTATTTCGgtaagatttatttacttatctatttatttattttcaattccctggtgaggtatactaatattgatgttatgcatgtgcatgcag

Basic information

species Glycine max
transcript GLYMA20G31030.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31030.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0157g00190.t01 (Vitis vinifera), 5'ss of exon 7
CAATAAACCAAGCAATGCTAAAGTGAACCAGTTAGCGAAAGCTGCAGAAAAATACACTCTTGCAAACCATCTATTTTGGGGGTTGTGGGGACTTATTTCGgtaag-atttatttacttatctatttatttattttcaattccctggtgaggtatactaatatt------gatgttatgcatgtgcatgcag
 ||  |||||||  |   | ||||  |  | |||||    | |||||| || |||||||||||||| ||||||||||||||  | |||||| | ||||||||| | |||| |    | ||    ||| |          | | ||  |   ||  || | |||      ||   ||| ||      |||||
TAACCAACCAAGTGACAGTGAAGTTGAAAAATTAGCCTGTGATGCAGAGAAGTACACTCTTGCAAATCATCTATTTTGGGGCATATGGGGAATAATTTCGgtatgcatttctgggttcattcgcttactatcaactgtattcatgcgggtataatctgagatttcacctgaatctat-cactgatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19268826|gb|BM885082.1|BM885082
EST:     AATACACTCTTGCAAACCATCTATTTTGGGGGTTGTGGGGACTTATTTCG                         AGTTATGTGAACAAAATTGATTTTGACTATAAGGAGTATGCAAGGCAGAGG
genomic: AATACACTCTTGCAAACCATCTATTTTGGGGGTTGTGGGGACTTATTTCGgtaagattta ... gtgcatgcagAGTTATGTGAACAAAATTGATTTTGACTATAAGGAGTATGCAAGGCAGAGG