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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAATCCCATTGCATATGACCTCGCAAATCATTTTTGTGAAATGGTGGCAGATTACCACAGTGACACACCTCATGTTCTTGACTACACGAAGTATCCAGgtaaagttcttgtttgtaatatttttgctgcccaaattacatttccacaatgagtaatagtatagttgcaattttacgtttgttgaaatcactctgaattgctgacacaccaaattggatatggtaaaccag

Basic information

species Glycine max
transcript GLYMA20G31030.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15200615|gb|BI424440.1|BI424440
EST:     AGATTACCACAGTGACACACCTCATGTTCTTGACTACACGAAGTATCCAG                         GACTAGAGGAACGTCAAAGATTTATCCGCAACTATCTGAGTTCTGAAG
genomic: AGATTACCACAGTGACACACCTCATGTTCTTGACTACACGAAGTATCCAGgtaaagttct ... ggtaaaccagGACTAGAGGAACGTCAAAGATTTATCCGCAACTATCTGAGTTCTGAAG
EST: gi|19268826|gb|BM885082.1|BM885082
EST:     AGATTACCACAGTGACACACCTCATGTTCTTGACTACACGAAGTATCCAG                         GACTAGAGGAACGTCAAAGATTTATCCGCAACTATCTGAGTTCTGAAG
genomic: AGATTACCACAGTGACACACCTCATGTTCTTGACTACACGAAGTATCCAGgtaaagttct ... ggtaaaccagGACTAGAGGAACGTCAAAGATTTATCCGCAACTATCTGAGTTCTGAAG