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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtctactgtcctgatgactccatgttatgagaagttgaaatcatgtcatgaaatgccacgcttctgaatctcataaatgtctaaaatttgttttggcaactctctgtacacagGCAATAAACCAAGCAATGCTAAAGTGAACCAGTTAGCGAAAGCTGCAGAAAAATACACTCTTGCAAACCATCTATTTTGGGGGTTGTGGGGACTTATTTC

Basic information

species Glycine max
transcript GLYMA20G31030.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31030.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv18s0157g00190.t01 (Vitis vinifera), 3'ss of exon 6
gttagtctactgtcctgatgactccatgttatgagaagttgaaatcatgtcatgaaatgccacgcttctgaatctcataaatgtctaaaatttgttttggcaactctctgtacacagGCAATAAACCAAGCAATGCTAAAGTGAACCAGTTAGCGAAAGCTGCAGAAAAATACACTCTTGCAAACCATCTATTTTGGGGGTTGTGGGGACTTATTTC
                   |  |  |  || |  |  ||||   | || || | | |||    |    |    |||| |  | | || | ||  |||   ||||    |||  | ||| ||  |||||||  |   | ||||  |  | |||||    | |||||| || |||||||||||||| ||||||||||||||  | |||||| | |||||
----------aaaaacagggggtggac-ttgtttgtggttggttttatatctttagatgatgggtcctt----ctcaaatctatatatacttactttctccaacat--tgtgaatagGTAACCAACCAAGTGACAGTGAAGTTGAAAAATTAGCCTGTGATGCAGAGAAGTACACTCTTGCAAATCATCTATTTTGGGGCATATGGGGAATAATTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15200615|gb|BI424440.1|BI424440
EST:     GACTAGAGGAACGTCAAAGATTTATCCGCAACTATCTGAGTTCTGAAG                         GCAATAAACCAAGCAATG
genomic: GACTAGAGGAACGTCAAAGATTTATCCGCAACTATCTGAGTTCTGAAGgttagtctac ... ctgtacacagGCAATAAACCAAGCAATG
EST: gi|19268826|gb|BM885082.1|BM885082
EST:     GACTAGAGGAACGTCAAAGATTTATCCGCAACTATCTGAGTTCTGAAG                         GCAATAAACCAAGCAATGCTAAAGTGAACCAGTTAGCGAAAGCTGCAGAAA
genomic: GACTAGAGGAACGTCAAAGATTTATCCGCAACTATCTGAGTTCTGAAGgttagtctac ... ctgtacacagGCAATAAACCAAGCAATGCTAAAGTGAACCAGTTAGCGAAAGCTGCAGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcttctgaatctcataaatgtctaaaatttgttttggcaactctctgtacacagGCAATAAACCAAGCAATGCTAAAGTGAACCAGTTAGCGAAAGCTGCAGAAAAATACACTCTTGCAAACCATCTATTTTGGGGGTTGTGGGGACTTATTTC
                    gtctaaa  putative branch site (score: 3)
                                         ctctctgt  putative PPT
              ataaatgtctaaaatt  TA-rich tract