1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...caaaactaaagcaattcatgtgctatttttttcttttgggtctatactgcccatgaaattgttgactgatatgcttgagttgtgaatataccacatgcagTGTCGCCTCTCAGCTACAATTAGATGTCTTTCTCATCCAAGTGCACATGTCCGAGCTCTGAGTATATCAGTTCTTCGTGACATTTTGCATACTGGTTCAA
species | Glycine max |
transcript | GLYMA20G30980.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGGAGAATCTGGATTGGCTGTGGCAGATGGCCTTTCAAACCTTTTAAAG TGTCGCCTCTCAGCTACAATTAGATGTCTTTCTCATCCAAGTGCACATGTCEST: gi|10231902|gb|BE800790.1|BE800790
genomic: TTGGAGAATCTGGATTGGCTGTGGCAGATGGCCTTTCAAACCTTTTAAAGgtgaacaaac ... ccacatgcagTGTCGCCTCTCAGCTACAATTAGATGTCTTTCTCATCCAAGTGCACATGTC
EST: TTGGAGAATCTGGATTGGCTGTGGCAGATGGCCTTTCAAACCTTTTAAAG TGTCGCCTCTCAGCTACAATTAGATGTCTTTTTCATCCAAGTGCACATGTCEST: gi|9902217|gb|BE611185.1|BE611185
genomic: TTGGAGAATCTGGATTGGCTGTGGCAGATGGCCTTTCAAACCTTTTAAAGgtgaacaaac ... ccacatgcagTGTCGCCTCTCAGCTACAATTAGATGTCTTTCTCATCCAAGTGCACATGTC
EST: TTGGAGAATCTGGATTGGCTGTGGCAGATGGCCTTTCAAACCTTTTAAAG TGTCGCCTCTCAGCTACAATTAGATGTCTTTCTCATCCAAGTGCACATGTC
genomic: TTGGAGAATCTGGATTGGCTGTGGCAGATGGCCTTTCAAACCTTTTAAAGgtgaacaaac ... ccacatgcagTGTCGCCTCTCAGCTACAATTAGATGTCTTTCTCATCCAAGTGCACATGTC
actgcccatgaaattgttgactgatatgcttgagttgtgaatataccacatgcagTGTCGCCTCTCAGCTACAATTAGATGTCTTTCTCATCCAAGTGCACATGTCCGAGCTCTGAGTATATCAGTTCTTCGTGACATTTTGCATACTGGTTCAA
gactgat putative branch site (score: 3)
atgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaactaaagcaattcatgtgctatttttttcttttgggtctatactgcccatgaaattgttgactgatatgcttgagttgtgaatataccacatgcagTGTCGCCTCTCAGCTACAATTAGATGTCTTTCTCATCCAAGTGCACATGTCCGAGCTCTGAGTATATCAGTTCTTCGTGACATTTTGCATACTGGTTCAA
caaaact
- - - - - - - - catgtgc
- - - - - - - - - - - - - - - - cttttgg
- - - - - - - - - - - - - - - - - - - - - - - ctgccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga