1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGTTTCTCTGTAGTTTCACTGTTATGGCACAAGTTGATTGCATCTCCTGAAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGgtacaaatacaaatgttatactgcagcatctttatcgtcttctcttttttttttttttgctgaattaatattctttttcttccaatggttgaattatatg...
species | Glycine max |
transcript | GLYMA20G30980.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAG GTGGTTGATGCATTATGCAATGTTGTTGTCAGCCTCACCAACAAAAGCAGCEST: gi|20811484|gb|BQ295962.1|BQ295962
genomic: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGgtacaaatac ... tgttatgtagGTTGTTGATGCATTATGCAATGTTG-TGTCAGCCTCACCAACAAAAGCAGC
EST: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAG GTTGTTGATGCATTATGCAATGTTGTGTCAGCCTCACCAACAAAAGCAGCTEST: gi|105633891|gb|DW247254.1|DW247254
genomic: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGgtacaaatac ... tgttatgtagGTTGTTGATGCATTATGCAATGTTGTGTCAGCCTCACCAACAAAAGCAGCT
EST: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAG GTTGTTGATGCATTATGCAATGTTGTGTCAGCCTCACCAACAAAAGCAGCTEST: gi|14989936|gb|BI315601.1|BI315601
genomic: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGgtacaaatac ... tgttatgtagGTTGTTGATGCATTATGCAATGTTGTGTCAGCCTCACCAACAAAAGCAGCT
EST: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAG GTTGTTGATGCATTATGCAATGTTGTGTCAGCCTCACCAACAAAAGCAGCT
genomic: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGgtacaaatac ... tgttatgtagGTTGTTGATGCATTATGCAATGTTGTGTCAGCCTCACCAACAAAAGCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTTTCTCTGTAGTTTCACTGTTATGGCACAAGTTGATTGCATCTCCTGAAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGgtacaaatacaaatgttatactgcagcatctttatcgtcttctcttttttttttttttgctgaattaatattctttttcttccaatggttgaattatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA