1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctatccaatgtttatttgttgtacattttttttataaattattattattacccacatttcatttgtatagtcactttcctgggcttgtttacttgtcagGCGGAGCGGGAATTGCAGCCCTGGATTGCCAAGGATGATGATTTAGGTCAGAAGATGTGGAGAATCAATCAGCGGATTGTGAAATTGATCGTGGAACTTA
species | Glycine max |
transcript | GLYMA20G30980.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTTGTTGTCAGCCTCACCAACAAAAGCAGCTACGGCAGTTGTACTTCAG GCGGAGCGGGAATTGCAGCCCTGGATTTGCCAAGGATGATGATTTAGGTCAEST: gi|193460434|gb|FK425775.1|FK425775
genomic: TGTTG-TGTCAGCCTCACCAACAAAAGCAGCTACGGCAGTTGTACTTCAGgtccaaaatt ... tacttgtcagGCGGAGCGGGAATTGCAGCCCTGGA-TTGCCAAGGATGATGATTTAGGTCA
EST: ATGTTGTGTCAGCCTCACCAACAAAAGCAGCTACGGCAGTTGTACTTCAG GCGGAGCGGGAATTGCAGCCCTGGATTGCCAAGGATGATGATTTAGGTCAG
genomic: ATGTTGTGTCAGCCTCACCAACAAAAGCAGCTACGGCAGTTGTACTTCAGgtccaaaatt ... tacttgtcagGCGGAGCGGGAATTGCAGCCCTGGATTGCCAAGGATGATGATTTAGGTCAG
ttattacccacatttcatttgtatagtcactttcctgggcttgtttacttgtcagGCGGAGCGGGAATTGCAGCCCTGGATTGCCAAGGATGATGATTTAGGTCAGAAGATGTGGAGAATCAATCAGCGGATTGTGAAATTGATCGTGGAACTTA
cttgttt CT-rich tract
atttcatttgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctatccaatgtttatttgttgtacattttttttataaattattattattacccacatttcatttgtatagtcactttcctgggcttgtttacttgtcagGCGGAGCGGGAATTGCAGCCCTGGATTGCCAAGGATGATGATTTAGGTCAGAAGATGTGGAGAATCAATCAGCGGATTGTGAAATTGATCGTGGAACTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - -ccaatgt
- - - - - - - - -tgttgta
- - - - - - - - - - - - - - - - - - - - - - - - - acccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgtt