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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTTGGGAGAGGAGAGAGAGTGGGAGTCAGAGAGCAAAGTAAAGCAGCCGATTGGACTTTGAgtccgtttgttccttggttttgttttcttcagatttttttctttttttcgttttttctgtcgtttcaccccaaacagatattttggtatccaaacagacctcatctctacattttttctttaccag

Basic information

species Glycine max
transcript GLYMA20G30740.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6667989|gb|AW279440.1|AW279440
EST:     TGGGAGTCAGAGAGCAAAGTAAAGCAGCCGATTGGACTTTGA                         CAGAACAGAAGAAACACGTTCGTTTCGTTTCGTTCCCATGGCGGTCTCCGT
genomic: TGGGAGTCAGAGAGCAAAGTAAAGCAGCCGATTGGACTTTGAgtccgtttgt ... tctttaccagCAGAACAGAAGAAACACGTTCGTTTCGTTTCGTTCCCATGGCGGTCTCCGT
EST: gi|254334469|gb|GR844254.1|GR844254
EST:     GAGTGGGAGTCAGAGAGCAAAGTAAAGCAGCCGATTGGACTTTGA                         CAGAACAGAAGAAACACGTTCGTTTCGTTTCGTTCCCATGGCGGTCTCCGT
genomic: GAGTGGGAGTCAGAGAGCAAAGTAAAGCAGCCGATTGGACTTTGAgtccgtttgt ... tctttaccagCAGAACAGAAGAAACACGTTCGTTTCGTTTCGTTCCCATGGCGGTCTCCGT
EST: gi|298198493|gb|HO040032.1|HO040032
EST:     CAAAGTAAAGCAGCCGATTGGACTTTGA                         CAGAACAGAAGAAACACGTTCGTTTCGTTTCGTTCCCATGGTGGTCTCCGT
genomic: CAAAGTAAAGCAGCCGATTGGACTTTGAgtccgtttgt ... tctttaccagCAGAACAGAAGAAACACGTTCGTTTCGTTTCGTTCCCATGGCGGTCTCCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGGTTGGGAGAGGAGAGAGAGTGGGAGTCAGAGAGCAAAGTAAAGCAGCCGATTGGACTTTGAgtccgtttgttccttggttttgttttcttcagatttttttctttttttcgttttttctgtcgtttcaccccaaacagatattttggtatccaaacagacctcatctctacattttttctttaccag

- - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - -  GCAAAG