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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtctttagtgtattaaagatgcccaagaacatcatcttaaagtgacttgtatatatccccgataatccttccctgtaaattccttattattattttttttttctacctttttcag

Basic information

species Glycine max
transcript GLYMA20G30740.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213604222|gb|DB974264.1|DB974264
EST:     CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTA                         CTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
genomic: CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtcttt ... cctttttcagCTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
EST: gi|23726584|gb|BU761289.1|BU761289
EST:     CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTA                         CTATAATGAAGACACAAAGAAGCT
genomic: CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtcttt ... cctttttcagCTATAATGAAGACACAAAGAAGCT
EST: gi|193585017|gb|FK542420.1|FK542420
EST:     CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTA                         CTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
genomic: CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtcttt ... cctttttcagCTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
EST: gi|192313925|gb|FK008777.1|FK008777
EST:     CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTA                         CTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
genomic: CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtcttt ... cctttttcagCTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
EST: gi|209714626|gb|BW654038.1|BW654038
EST:     CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTA                         CTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
genomic: CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtcttt ... cctttttcagCTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
EST: gi|20812770|gb|BQ297248.1|BQ297248
EST:     CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTA                         CTATAATGAAGACACAAAGAA
genomic: CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtcttt ... cctttttcagCTATAATGAAGACACAAAGAA
EST: gi|192313926|gb|FK008778.1|FK008778
EST:     CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTA                         CTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
genomic: CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtcttt ... cctttttcagCTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
EST: gi|208132109|gb|GD929440.1|GD929440
EST:     AAGGTTAAGCAATAACCCTA                         CTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
genomic: AAGGTTAAGCAATAACCCTAgtaagtcttt ... cctttttcagCTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
EST: gi|17153165|gb|BM143098.1|BM143098
EST:     CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTA                         CTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
genomic: CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtcttt ... cctttttcagCTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
EST: gi|151403275|gb|EV273085.1|EV273085
EST:     CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTA                         CTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
genomic: CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtcttt ... cctttttcagCTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
EST: gi|10254490|gb|BE822256.1|BE822256
EST:     CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTA                         CTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
genomic: CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtcttt ... cctttttcagCTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
EST: gi|9902987|gb|BE611955.1|BE611955
EST:     CAGCTCATTGAACGCATAGAAGCCTGCCTCAAGGTTTAGCAATAACCCTA                         CTATAATGAATACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
genomic: CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtcttt ... cctttttcagCTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
EST: gi|254334469|gb|GR844254.1|GR844254
EST:     CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTA                         CTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
genomic: CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtcttt ... cctttttcagCTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
EST: gi|21600748|gb|BQ611079.1|BQ611079
EST:     CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTA                         CTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
genomic: CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtcttt ... cctttttcagCTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
EST: gi|20812879|gb|BQ297357.1|BQ297357
EST:     CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTA                         CTATAATGAAG
genomic: CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtcttt ... cctttttcagCTATAATGAAG
EST: gi|151404024|gb|EV273834.1|EV273834
EST:     CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTA                         CTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC
genomic: CAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtcttt ... cctttttcagCTATAATGAAGACACAAAGAAGCTTGTCTATTGGAATGTTCGATCACATAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTCAAGGTTAAGCAATAACCCTAgtaagtctttagtgtattaaagatgcccaagaacatcatcttaaagtgacttgtatatatccccgataatccttccctgtaaattccttattattattttttttttctacctttttcag

- - - - - - - - - -  CAGCTC
- - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA