1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATTGATACTGAGAAGTATCCTAGCATTGCTGACAAATACAGAATTGAGGCCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcagatcatccatttttttcatttgaattatgctttccttgcacctggtggttaactgtgtctcagcactttatatataatatatggaagctcca...
species | Glycine max |
transcript | GLYMA20G30740.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTCEST: gi|23726584|gb|BU761289.1|BU761289
genomic: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTC
EST: CGTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTCEST: gi|193585017|gb|FK542420.1|FK542420
genomic: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTC
EST: CATCATGTTTAAGGATGGAGAACCTTATGATCGCTTT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTCEST: gi|10231415|gb|BE800303.1|BE800303
genomic: CATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTC
EST: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAEST: gi|192313925|gb|FK008777.1|FK008777
genomic: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAA
EST: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTCEST: gi|209714626|gb|BW654038.1|BW654038
genomic: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTC
EST: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTCEST: gi|20812770|gb|BQ297248.1|BQ297248
genomic: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTC
EST: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTCEST: gi|192313926|gb|FK008778.1|FK008778
genomic: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTC
EST: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTCEST: gi|10847375|gb|BF071528.1|BF071528
genomic: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTC
EST: CCTTGCCGACTNTCATCATGTGTAAGGATGGAGAACCTTATGATCGCTNT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAAGCCG-CCTEST: gi|17153165|gb|BM143098.1|BM143098
genomic: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAA-GCCGGCCT
EST: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTCEST: gi|151403275|gb|EV273085.1|EV273085
genomic: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTC
EST: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTCEST: gi|10254490|gb|BE822256.1|BE822256
genomic: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTC
EST: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTCEST: gi|9902987|gb|BE611955.1|BE611955
genomic: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTC
EST: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCTGCCTCEST: gi|254334469|gb|GR844254.1|GR844254
genomic: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTC
EST: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTCEST: gi|21600748|gb|BQ611079.1|BQ611079
genomic: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTC
EST: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTCEST: gi|20812879|gb|BQ297357.1|BQ297357
genomic: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTC
EST: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTCEST: gi|151404024|gb|EV273834.1|EV273834
genomic: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTC
EST: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTT GAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTC
genomic: CCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcaga ... ttgattccagGAGGGAGCATTGACTGCAGATCAGCTCATTGAACGCATAGAAGCCGGCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGATACTGAGAAGTATCCTAGCATTGCTGACAAATACAGAATTGAGGCCTTGCCGACTTTCATCATGTTTAAGGATGGAGAACCTTATGATCGCTTTgtaagtcagatcatccatttttttcatttgaattatgctttccttgcacctggtggttaactgtgtctcagcactttatatataatatatggaagctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA