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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCAAGCAATCCTTTCTGCAATTCCCGTCGTGCACGCGCCTTCTTCGGATTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaaccacgctttctgctttcatttttcatagcagttatgcatagattcacgagtttcttcatagtttagtaaatcgagcaacaggcgtgatta...

Basic information

species Glycine max
transcript GLYMA20G30740.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717749|gb|BW654037.1|BW654037
EST:     TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|213604222|gb|DB974264.1|DB974264
EST:     CTCCCGCTCCATCGCGACCTCGAGTCCTTGAACAG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: CTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|23726584|gb|BU761289.1|BU761289
EST:     TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|193363137|gb|FK326171.1|FK326171
EST:     TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|10231415|gb|BE800303.1|BE800303
EST:     TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|192313925|gb|FK008777.1|FK008777
EST:     TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|209714626|gb|BW654038.1|BW654038
EST:     TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|20812770|gb|BQ297248.1|BQ297248
EST:     TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCTATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|10847634|gb|BF070281.1|BF070281
EST:     TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|192313926|gb|FK008778.1|FK008778
EST:     TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|10847375|gb|BF071528.1|BF071528
EST:     TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|17153165|gb|BM143098.1|BM143098
EST:     TAGCACTCCACGTAG-TCCCGCTCCATCGCGACCTCGATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TAGCACTCCACG-CGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|151403275|gb|EV273085.1|EV273085
EST:     TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|298179572|gb|HO028043.1|HO028043
EST:     TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|207712273|gb|GD693317.1|GD693317
EST:     ATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: ATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|207786234|gb|GD758641.1|GD758641
EST:     TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|254334469|gb|GR844254.1|GR844254
EST:     TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCGTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|6667989|gb|AW279440.1|AW279440
EST:     TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
EST: gi|20812879|gb|BQ297357.1|BQ297357
EST:     TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTG                         GTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT
genomic: TTAGCACTCCACGCGCTCCCGCTCCATCGCGACCTCGATTCCTTCCTCTGgtaaccaaaa ... ttttctgtagGTTCAAGCGAAGAAACAAACCTATAACTCGTTTGACGATTTGCTTGCCAAT