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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTGTTAAGCACTGGAAGTGGTGTTAATGGTTTCACCCTTGATCCATCTCTTGGGGAGTTCATTCTAACTCACCCTGACATCAAGgtattaatctgcccgtcgttcatagtaaattgttattctctctgtaaatgctctggtctgacgactcaactcttaaaaaagtcacatttgttcaaactaa...

Basic information

species Glycine max
transcript GLYMA20G30620.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30620.3 (Glycine max), 5'ss of exon 7
lower sequence: PP1S385_43V6.1 (Physcomitrella patens), 5'ss of exon 7
CTTGTGTTAAGCACTGGAAGTGGTGTTAATGGTTTCACCCTTGATCCATCTCTTGGGGAGTTCATTCTAACTCACCCTGACATCAAGgtattaatctgcccgtcgttcatagtaaattgttattctctctgtaaatgctctggtctgacgactcaactcttaaaaaagtcacatttgttcaaactaa-
 | ||  | ||||| ||   ||| |||||||| |||||||| ||||| || ||||||||||||||  | || ||||||||||||||||| |  |||||   ||| ||    |  | ||  | ||||   | |      |    |     |   | ||  ||  |  |   | |    | |||      
TTGGTACTGAGCACAGGTGCTGGGGTTAATGGCTTCACCCTCGATCCTTCACTTGGGGAGTTCATCTTGACGCACCCTGACATCAAGgtttatatctgtatgtcctttgatgacatttcgtgttctaattttcctaaatgcatttaagtgttcccacatttgcatgaactaaaccc-tacaagtccgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8670382|gb|BE191489.1|BE191489
EST:     CCCTTGATCCATCTCTTGGGGAGTTCATTCTAACTCACCCTGACATCAAG                         ATCCCAAAGAAAGGCAAGATCTATTCAGTGAATGAAGGAAATGCTAAAAAC
genomic: CCCTTGATCCATCTCTTGGGGAGTTCATTCTAACTCACCCTGACATCAAGgtattaatct ... cacctttcagATCCCAAAGAAAGGCAAGATCTATTCAGTGAATGAAGGAAATGCTAAAAAC