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gtaagtcatcaatattttatatgtgatttgatgtgtcttgaactaagatatagtatatatatatatatatgtgtgtgtgtgtgcgcgcgcttttgttgatggtgtgagatattttcccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTAAGCGTGGAAA
species | Glycine max |
transcript | GLYMA20G30620.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCTATCCAATGATGTCTTCATCAAGGCATTGATCAGCAGTGGACGAACA TGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTEST: gi|120531951|gb|EH260084.1|EH260084
genomic: TCCTATCCAATGATGTCTTCATCAAGGCATTGATCAGCAGTGGACGAACAgtaagtcatc ... attttcccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCT
EST: TCCTATCCAATGATGTCTTCATCAAGGCATTGATCAGCAGTGGACGAACA TGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTEST: gi|120529729|gb|EH257863.1|EH257863
genomic: TCCTATCCAATGATGTCTTCATCAAGGCATTGATCAGCAGTGGACGAACAgtaagtcatc ... attttcccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCT
EST: TCCTATCCAATGATGTCTTCATCAAGGCATTGATCAGCAGTGGACGAACA TGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTEST: gi|192316335|gb|FK011680.1|FK011680
genomic: TCCTATCCAATGATGTCTTCATCAAGGCATTGATCAGCAGTGGACGAACAgtaagtcatc ... attttcccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCT
EST: TCCTATCCAATGATGTCTTCATCAAGGCATTGATCAGCAGTGGACGAACA TGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTEST: gi|20497840|gb|BQ272770.1|BQ272770
genomic: TCCTATCCAATGATGTCTTCATCAAGGCATTGATCAGCAGTGGACGAACAgtaagtcatc ... attttcccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCT
EST: TCCTATCCAATGATGTCTTCATCAAGGCATTGATCAGCACTGGACGAACA TGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTEST: gi|209707338|gb|BW670901.1|BW670901
genomic: TCCTATCCAATGATGTCTTCATCAAGGCATTGATCAGCAGTGGACGAACAgtaagtcatc ... attttcccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCT
EST: TCCTATCCAATGATGTCTTCATCAAGGCATTGATCAGCAGTGGACGAACA TGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCT
genomic: TCCTATCCAATGATGTCTTCATCAAGGCATTGATCAGCAGTGGACGAACAgtaagtcatc ... attttcccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCT
tatatgtgtgtgtgtgtgcgcgcgcttttgttgatggtgtgagatattttcccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTAAGCGTGGAAA
tgttgat putative branch site (score: 4)
tattttccc putative PPT
agatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcatcaatattttatatgtgatttgatgtgtcttgaactaagatatagtatatatatatatatatgtgtgtgtgtgtgcgcgcgcttttgttgatggtgtgagatattttcccagTGCATCTTGGTGTCTGAAGAAGATGAGGAAGCAACATTTGTGGAACCTTCTAAGCGTGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA