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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATTATATTGGTCGAAATGATGACCATACTGGTCACCGAATTCTAAAGGACACTAAAACACTTGGATCTGCTTTTGACCGCTACCTTCAAAGCGCTGGGgtaacatcttaacatgtcttatttacattatttgtgtgaggatgtgctttcacagcttgtctgctgaaaagttctttttttggttatgaagcag

Basic information

species Glycine max
transcript GLYMA20G30540.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209727748|gb|BW658668.1|BW658668
EST:     ACACTAAAACACTTGGATCTGCTTTTGACCGCTACCTTCAAAGCGCTGGGCAG                       
genomic: ACACTAAAACACTTGGATCTGCTTTTGACCGCTACCTTCAAAGCGCT-GG--Ggtaacatctt ... tatgaagc
EST: gi|58014777|gb|CX701519.1|CX701519
EST:     ACACTAAAACACTTGGATCTGCTTTTGACCGCTACTTTCAAAGCGCTGGG                         CTTACTTCGTTTAACTCGGGGGAAGCCAGCGCAATTGGCAGTGTTGGTTTG
genomic: ACACTAAAACACTTGGATCTGCTTTTGACCGCTACCTTCAAAGCGCTGGGgtaacatctt ... tatgaagcagCTTACTTCGTTTAACTCGGGGGAAGCCAGCGCAATTGGCAGTGTTGGTTTG
EST: gi|22522781|gb|BU081592.1|BU081592
EST:     ACACTAAAACACTTGGATCTGCTTTTGACCGCTACCTTCAAAGCGCTGGG                         CTTACTTCGTTTAACTCGGGGGAAGCCAGCGCAATTGGCAGTGTTGGTTTG
genomic: ACACTAAAACACTTGGATCTGCTTTTGACCGCTACCTTCAAAGCGCTGGGgtaacatctt ... tatgaagcagCTTACTTCGTTTAACTCGGGGGAAGCCAGCGCAATTGGCAGTGTTGGTTTG