Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgacattgcatatggcaaaacttctatgatagagatatgtattttcagcttcacttttttattagagaagttgtaagactagaatctgttacattgcagATATTTCACCTTCTGGTCTGACTTCAGGGGGCAATGAGATGCATAATTATATTGGTCGAAATGATGACCATACTGGTCACCGAATTCTAAAGGACACTAA

Basic information

species Glycine max
transcript GLYMA20G30540.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209727748|gb|BW658668.1|BW658668
EST:     GCCGTTTCTCCCTTCTTCCGCCATGCTTAAACGACCTCGTACTGAATACG                         ATATTTCACCTTCTGGTCTGACTTCAGGGGGCAATGAGATGCATAATTATA
genomic: GCCGTTTCTCCCTTCTTCCGCCATGCTTAAACGACCTCGTACTGAATACGgttcgttctt ... tacattgcagATATTTCACCTTCTGGTCTGACTTCAGGGGGCAATGAGATGCATAATTATA
EST: gi|22522781|gb|BU081592.1|BU081592
EST:     GCCGTTTCTCCCTTCTTCCGCCATGCTTAANNNNNNNCTTACTGAATACG                         ATATTTCACCTTCTGGTCTGACTTCAGGGGGCAATGAGATGCATAATTATA
genomic: GCCGTTTCTCCCTTCTTCCGCCATGCTTAAACGACCTCGTACTGAATACGgttcgttctt ... tacattgcagATATTTCACCTTCTGGTCTGACTTCAGGGGGCAATGAGATGCATAATTATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagcttcacttttttattagagaagttgtaagactagaatctgttacattgcagATATTTCACCTTCTGGTCTGACTTCAGGGGGCAATGAGATGCATAATTATATTGGTCGAAATGATGACCATACTGGTCACCGAATTCTAAAGGACACTAA
     ttcacttttttatta  TA-rich tract