1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacatcttaacatgtcttatttacattatttgtgtgaggatgtgctttcacagcttgtctgctgaaaagttctttttttggttatgaagcagCTTACTTCGTTTAACTCGGGGGAAGCCAGCGCAATTGGCAGTGTTGGTTTGGAAAGGGGTGTTGGTGGATTGCCACGCCATTCACTAACTGATCCTGCTG
species | Glycine max |
transcript | GLYMA20G30540.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACACTAAAACACTTGGATCTGCTTTTGACCGCTACCTTCAAAGCGCTGGGCAGEST: gi|58014777|gb|CX701519.1|CX701519
genomic: ACACTAAAACACTTGGATCTGCTTTTGACCGCTACCTTCAAAGCGCT-GG--Ggtaacatctt ... tatgaagc
EST: ACACTAAAACACTTGGATCTGCTTTTGACCGCTACTTTCAAAGCGCTGGG CTTACTTCGTTTAACTCGGGGGAAGCCAGCGCAATTGGCAGTGTTGGTTTGEST: gi|22522781|gb|BU081592.1|BU081592
genomic: ACACTAAAACACTTGGATCTGCTTTTGACCGCTACCTTCAAAGCGCTGGGgtaacatctt ... tatgaagcagCTTACTTCGTTTAACTCGGGGGAAGCCAGCGCAATTGGCAGTGTTGGTTTG
EST: ACACTAAAACACTTGGATCTGCTTTTGACCGCTACCTTCAAAGCGCTGGG CTTACTTCGTTTAACTCGGGGGAAGCCAGCGCAATTGGCAGTGTTGGTTTG
genomic: ACACTAAAACACTTGGATCTGCTTTTGACCGCTACCTTCAAAGCGCTGGGgtaacatctt ... tatgaagcagCTTACTTCGTTTAACTCGGGGGAAGCCAGCGCAATTGGCAGTGTTGGTTTG
ggatgtgctttcacagcttgtctgctgaaaagttctttttttggttatgaagcagCTTACTTCGTTTAACTCGGGGGAAGCCAGCGCAATTGGCAGTGTTGGTTTGGAAAGGGGTGTTGGTGGATTGCCACGCCATTCACTAACTGATCCTGCTG
ttctttttttggtt CT-rich tract
aaaagttcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatcttaacatgtcttatttacattatttgtgtgaggatgtgctttcacagcttgtctgctgaaaagttctttttttggttatgaagcagCTTACTTCGTTTAACTCGGGGGAAGCCAGCGCAATTGGCAGTGTTGGTTTGGAAAGGGGTGTTGGTGGATTGCCACGCCATTCACTAACTGATCCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA