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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATCATCAAAGTCTTTATTTTCACAGCTACTGAACTCCCTTTTTCGTGCCCCCATGTCATTTTATGACTCCACTCCTTTAGGAAGGATACTTAGTAGGgtaagcatattaaacagttttttctctccctttgcagagtaatgcgataaacagaaacatttatgttttgactgttatttccttgttcag

Basic information

species Glycine max
transcript GLYMA20G30490.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30490.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G59140.1 (Arabidopsis thaliana), 5'ss of exon 4
TCAATCATCAAAGTCTTTATTTTCACAGCTACTGAACTCCCTTTTTCGTGCCCCCATGTCATTTTATGACTCCACTCCTTTAGGAAGGATACTTAGTAGGgtaagcatattaaacagttttttctctccctttgcagagtaatgcgataaacagaaacattta-tgttttgactgttatttccttgttcag
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GAAGTCATCAGCTTCATTGTTTTCTCAGCTTCTTAACTCTCTTTTTAGAGCACCTATGTCATTTTATGACTCCACACCTCTTGGACGGATTCTTAGCAGGgtaa--atgctaatgaacttgatgaatatttatgttta-cattctggtattcaacttctttaactgtaattactttggatttgcag-----