1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ACGCTTTGGTATTATACCTCAGGATCCTACTCTTTTTAATGGGACAGTCAGATACAATTTGGACCCTTTATCTCAACACTCTGATCAAGAGATATGGGAGgtaatactatatagtttgttattttttagtatgctgccaagttttttatgtttgcttatctcaactttccatggtacatgtggactgattgtagcttttatatgaag
species | Glycine max |
transcript | GLYMA20G30490.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GATACAATTTGGACCCTTTATCTCAACACTCTGATCAAGAGATATGGGAG GTTCTAGG-AAGTGTCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGAGGGAEST: gi|254336853|gb|GR843032.1|GR843032
genomic: GATACAATTTGGACCCTTTATCTCAACACTCTGATCAAGAGATATGGGAGgtaatactat ... ttatatgaagGTTCTAGGGAAGTGTCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGAGGGA
EST: GATACAATTTGGACCCTTTATCTCAACACTCTGATCAAGAGATATGGGAG GTTCTAGGGAAGTGTCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGAGGGAEST: gi|254336852|gb|GR843031.1|GR843031
genomic: GATACAATTTGGACCCTTTATCTCAACACTCTGATCAAGAGATATGGGAGgtaatactat ... ttatatgaagGTTCTAGGGAAGTGTCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGAGGGA
EST: GATACAATTTGGACCCTTTATCTCAACACTCTGATCAAGAGATATGGGAG GTTCTAGGGAAGTGTCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGAGGGAEST: gi|4396501|gb|AI495498.1|AI495498
genomic: GATACAATTTGGACCCTTTATCTCAACACTCTGATCAAGAGATATGGGAGgtaatactat ... ttatatgaagGTTCTAGGGAAGTGTCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGAGGGA
EST: GATACAATTTGGACCCTTTATCTCAACACTCTGATCAAGAGATATGGGAG GTTCTAAGGGAAGTG-CAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGAAGG
genomic: GATACAATTTGGACCCTTTATCTCAACACTCTGATCAAGAGATATGGGAGgtaatactat ... ttatatgaagGTTCTA-GGGAAGTGTCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGCTTTGGTATTATACCTCAGGATCCTACTCTTTTTAATGGGACAGTCAGATACAATTTGGACCCTTTATCTCAACACTCTGATCAAGAGATATGGGAGgtaatactatatagtttgttattttttagtatgctgccaagttttttatgtttgcttatctcaactttccatggtacatgtggactgattgtagcttttatatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA