Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATACATAATGGAAGGACTTGCTGGGAAAACAGTCTTGCTTGTGACTCATCAAGTTGATTTCCTTCCAGCATTTGATTCTGTTTTGgtaattgctttcatcttagagcactggctatgtcattgtttcattttctttttctgcatatagttaaaatttaatggttatgccatattaaagcactggctgtaaattagcatggctgtaattatttctttgtttatag

Basic information

species Glycine max
transcript GLYMA20G30490.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30490.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G59140.1 (Arabidopsis thaliana), 5'ss of exon 3
GAATACATAATGGAAGGACTTGCTGGGAAAACAGTCTTGCTTGTGACTCATCAAGTTGATTTCCTTCCAGCATTTGATTCTGTTTTGgtaattgctttcatcttagagcactggctatgtcattgtttcattttctttttctgcatatagttaaaatttaatggttatgccatattaaagcactggctgtaaattagcatggctgtaattatttctttgtttatag
|||||  | ||||| |  || || || ||| | || ||| | || || |||||||| |||||| | || || |||||||||||||||||||||    | |||||  |        |     ||| |||   |||  | || |     | |||     ||| ||    ||      ||                                                 
GAATATGTTATGGATGCTCTCGCGGGAAAAGCTGTGTTGTTGGTTACACATCAAGTGGATTTCTTGCCTGCTTTTGATTCTGTTTTGgtaatt----tgatcttgaaatcagaattg----attcttttggttttctgtttttggcttggtt---gcttattgtacttgtttctctag------------------------------------------------