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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttacatctttttttccccataggtatttacttcactataagttaatttgcatatttcttccagtgctaataccctttgtgtgataaaatatgttacagGAAGTTGAAGAAGTGGGAGGGCTGGAAGAGCTAGAGAAAGAGATAAGTAGGAGAATGAGGTCCGGTTCATGACCATGCCACTGGTATTAGCTAGACTTGT

Basic information

species Glycine max
transcript GLYMA20G30230.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31311683|gb|CD396886.1|CD396886
EST:     ATTCGGACAAATTCAACGGGGTGCCATATGGCTTGTTTTTGGGACCAAAG                         GAAGTTGAAGAAGTGGGAGGGCTGGAAGAGCTAGAGAAAGAGATAAGTAGG
genomic: ATTCGGACAAATTCAACGGGGTGCCATATGGCTTGTTTTTGGGACCAAAGgtcagccacg ... tatgttacagGAAGTTGAAGAAGTGGGAGGGCTGGAAGAGCTAGAGAAAGAGATAAGTAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgcatatttcttccagtgctaataccctttgtgtgataaaatatgttacagGAAGTTGAAGAAGTGGGAGGGCTGGAAGAGCTAGAGAAAGAGATAAGTAGGAGAATGAGGTCCGGTTCATGACCATGCCACTGGTATTAGCTAGACTTGT
                    tgctaat  putative branch site (score: 2)
                                     tgataaaatatgtta  TA-rich tract