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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcatccaatttttcatattttttttgtgatttgattcgatcaattattttagacaattcaccaagaaaattgaataattaagagttatttttattatttatcttattcaataataataataaaaaaaaaaacatgagcttgagttgttgctttgcagTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTTAACGACGTTTTTGCGATAATTAACGCTGTCCCTGCGATCGTTCTTCTCTCATACGGTTTTTTCC

Basic information

species Glycine max
transcript GLYMA20G30230.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30230.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G25700.2 (Arabidopsis thaliana), 3'ss of exon 3
gtctgcatccaatttttcatattttttttgtgatttgattcgatcaattattttagacaattcaccaagaaaattgaataattaagagttatttttattatttatcttattcaataataataataaaaaaaaaaacatgagcttgagttgttgctttgcagTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTTAACGACGTTTTTGCGATAATTAACGCTGTCCCTGCGATCGTTCTTCTCTCATACGGTTTTTTCC
                                                                                       |||| |||  ||  | |   |  |||  |  | ||   ||    ||| |    | ||    | |||  ||||||||||| ||   ||||||||| |||||||| ||||| ||||| |||||||| ||| | |||||||  || ||||| | ||| ||||| || || || ||| 
---------------------------------------------------------------------------------------gttactttgcttgctgaaaattctcatcatgactatccaatttcaaaccgcctgatttgaattttg--ttgcagTCACATCACAAACCAAGAGAAGGACCGTTTGAGCTAAACGATGTTTTTGCTATAGTGAACGCTGGTCCAGCGATTGGTCTCCTCTCTTATGGATTCTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11412630|gb|BF424641.1|BF424641
EST:     GATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAG                         TCACACCATCGACCAAGAGAGGGACCGNTCGAGCTTAACGACGTTTTTGCG
genomic: GATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAGgtctgcatcc ... tgctttgcagTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTTAACGACGTTTTTGCG
EST: gi|120492766|gb|EH220933.1|EH220933
EST:     GATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAG                         TCACACCATCGACCAAGAGAGGGACCGTTCGAGCTTAACGACGTTNTTGCG
genomic: GATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAGgtctgcatcc ... tgctttgcagTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTTAACGACGTTTTTGCG
EST: gi|31311683|gb|CD396886.1|CD396886
EST:     GGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAG                         TCACACCATCGACCAAGAGAGGGACCGTTCGAGCTTAACGACGTTTTTGCG
genomic: GGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAGgtctgcatcc ... tgctttgcagTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTTAACGACGTTTTTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattcaataataataataaaaaaaaaaacatgagcttgagttgttgctttgcagTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTTAACGACGTTTTTGCGATAATTAACGCTGTCCCTGCGATCGTTCTTCTCTCATACGGTTTTTTCC
                                            ttgcttt  CT-rich tract
      aataataataataaaa  TA-rich tract