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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatatttttcattttcatatgtttagcaaagcaaattagagaaggaaggtgttatgcttttgtgtgtttgtttctgtttcttgtggaataggatctgaattatgatctcatgaccttgaatttttgtggtctgtattcagCTCCACCATTCGGACAAATTCAACGGGGTGCCATATGGCTTGTTTTTGGGACCAAAG

Basic information

species Glycine max
transcript GLYMA20G30230.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30230.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0050g01090.t01 (Vitis vinifera), 3'ss of exon 5
gtaattatatttttcattttcatatgtttagcaaagcaaattagagaaggaaggtgttatgcttttgtgtgtttgtttctgtttcttgtggaataggatctgaattatgatctcatgaccttgaatttttgtggtctgtattcagCTCCACCATTCGGACAAATTCAACGGGGTGCCATATGGCTTGTTTTTGGGACCAAAG
                     |    |  | ||   || |   ||      |  | |  |  | || |   |||  || | ||  || |    |    | | || |   |||  | | ||| ||  || ||  |  ||   |||||||||||| || ||||||||||| ||||| ||||||||  |||| ||||| || |||
-------------------gtaagcatgcaccaccacacacacgatccttcatttttctttttcttttccttttcctttttttgtttttttttttaattttcaactg-aatccaacggcct-gatcttctgatgcatggtctcagCTCCACCACTCAGACAAATTCAATGGGGTCCCATATGGGCTGTTCTTGGGCCCTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120492844|gb|EH221011.1|EH221011
EST:     GTCCCATTGCCAACGTGCCCTACTTTAGAAGAGTTGCTGCTGCTCACCAA                         CTCCACCATTCGGACAAATTCAACGGGGTGCCATATGGCTTGTTTTTGGGA
genomic: GTCCCATTGCCAACGTGCCCTACTTTAGAAGAGTTGCTGCTGCTCACCAAgtaattatat ... ctgtattcagCTCCACCATTCGGACAAATTCAACGGGGTGCCATATGGCTTGTTTTTGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaataggatctgaattatgatctcatgaccttgaatttttgtggtctgtattcagCTCCACCATTCGGACAAATTCAACGGGGTGCCATATGGCTTGTTTTTGGGACCAAAG
                              ttgaattttt  TA-rich tract