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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattaattataattaattcacacttattatagtctaagtttgcgctattttttgcatctgaatattgggtttgtgttggcatagGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTCGGTGCTGCT

Basic information

species Glycine max
transcript GLYMA20G30230.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23064063|gb|BU578836.1|BU578836
EST:     CCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAG                         GGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTC
genomic: CCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAGgtatattaat ... gttggcatagGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTC
EST: gi|11412630|gb|BF424641.1|BF424641
EST:     CCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAG                         GGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTC
genomic: CCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAGgtatattaat ... gttggcatagGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTC
EST: gi|120492766|gb|EH220933.1|EH220933
EST:     CCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAG                         GGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTC
genomic: CCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAGgtatattaat ... gttggcatagGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTC
EST: gi|27426670|gb|CA938190.1|CA938190
EST:     CCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAN                         GGTGGAGATGTTCCTT
genomic: CCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAGgtatattaat ... gttggcatagGGTGGAGATGTTCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtctaagtttgcgctattttttgcatctgaatattgggtttgtgttggcatagGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTCGGTGCTGCT
                tatttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatattaattataattaattcacacttattatagtctaagtttgcgctattttttgcatctgaatattgggtttgtgttggcatagGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTCGGTGCTGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT