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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAGGTTCACCTATCTCGTTGCGGCTGTCATGTCTAGCTTTGGCATCACCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAGgtatattaattataattaattcacacttattatagtctaagtttgcgctattttttgcatctgaatattgggtttgtgttggcatag

Basic information

species Glycine max
transcript GLYMA20G30230.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30230.2 (Glycine max), 5'ss of exon 1
lower sequence: AT4G25700.1 (Arabidopsis thaliana), 5'ss of exon 1
CCAGAGGTTCACCTATCTCGTTGCGGCTGTCATGTCTAGCTTTGGCATCACCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAGgtata-ttaatta--taattaattcacacttatt--atagtctaagtttgcgctattttttgcatctgaatattgggtttgtgttggcatag
  |||||| ||| |||||  | || ||| |  |||| |||||||| ||||| |||||||| ||  | || ||||| || ||||||||||||||||||||||||||  ||| ||  ||| ||| | | ||  |||  | | ||| | ||  | |    |||||  | ||  |       |             
GGAGAGGTCCACTTATCTAATCGCTGCTATGTTGTCGAGCTTTGGTATCACTTCTATGGCTGTTATGGCTGTTTACTACAGATTCTCTTGGCAAATGGAGgtataactaactaactaactaact-aaaccaattcgaaattctgaattctcacatccttttg--tttggttgcaaaaatcag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23064063|gb|BU578836.1|BU578836
EST:     CCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAG                         GGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTC
genomic: CCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAGgtatattaat ... gttggcatagGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTC
EST: gi|11412630|gb|BF424641.1|BF424641
EST:     CCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAG                         GGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTC
genomic: CCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAGgtatattaat ... gttggcatagGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTC
EST: gi|120492766|gb|EH220933.1|EH220933
EST:     CCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAG                         GGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTC
genomic: CCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAGgtatattaat ... gttggcatagGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTC
EST: gi|27426670|gb|CA938190.1|CA938190
EST:     CCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAN                         GGTGGAGATGTTCCTT
genomic: CCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAGgtatattaat ... gttggcatagGGTGGAGATGTTCCTT