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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcttttttgtggcacacaaggcacttttttttttctccctcttttcaccctctttgttctacacctttgatatgattggcttaatcttgatgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAACGTAACCTCTGGATTCATAGGCATAGGGAGTTAAAAGTAACTTGTCCAA

Basic information

species Glycine max
transcript GLYMA20G30120.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31467450|gb|CD409478.1|CD409478
EST:     GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTG                         CTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
genomic: GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttt ... atgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
EST: gi|31458767|gb|CD400795.1|CD400795
EST:     GCATACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTG                         CTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
genomic: GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttt ... atgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
EST: gi|15204816|gb|BI427584.1|BI427584
EST:     GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTG                         CTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
genomic: GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttt ... atgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
EST: gi|151402645|gb|EV272458.1|EV272458
EST:     GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTG                         CTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
genomic: GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttt ... atgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
EST: gi|31473277|gb|CD415290.1|CD415290
EST:     GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTG                         CTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
genomic: GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttt ... atgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
EST: gi|22525441|gb|BU084252.1|BU084252
EST:     GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTG                         CTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
genomic: GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttt ... atgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
EST: gi|192334066|gb|FK026223.1|FK026223
EST:     GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTG                         CTGAGGAAACAGCTACTACAGTGCCTCCACCTTTGAAGCCAGAAAGTGAAA
genomic: GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttt ... atgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
EST: gi|298179287|gb|HO027758.1|HO027758
EST:     GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTG                         CTGGGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
genomic: GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttt ... atgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaccctctttgttctacacctttgatatgattggcttaatcttgatgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAACGTAACCTCTGGATTCATAGGCATAGGGAGTTAAAAGTAACTTGTCCAA
                                        tcttgat  putative branch site (score: 4)
                     tttgatat  TA-rich tract