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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGTGGTATATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttgattgatgtgtatctatgtacctcttgctctgtgtcattctttttttcaaagaattttaaatgtttttgcatatgctattcttgtttgttgt...

Basic information

species Glycine max
transcript GLYMA20G30120.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30120.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G52440.1 (Arabidopsis thaliana), 5'ss of exon 2
TAAAGTGGTATATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttgattgatgtgtatctatgtacctcttgctctgtgtc-attctttttttcaaagaattttaaatgtttttgcatatgctattcttgtttgttgt
||   || |   ||| ||||| ||||| |||||||| |||||||||||||| ||||| || ||||||||||| || ||||| |||||||||||||||||||| ||| |  ||| ||||| |  |  | | |  || |   | |  | || | | ||   ||  ||| |     || || ||  |   |  ||  ||  | |
TATGATGATTCGTGCGTCTCTGTTTGGTGTTGGAGCACCTGAGGCTTTGGTTATTGGTGTTGTTGCTTTGTTAGTCTTTGGTCCTAAAGGTCTTGCTGAGgttagtgtctttg-tgtgtgtaaaatttcttgatgattgatttggaatcatatctttttagggtttaagcaacttatgaattagtactgtttagtttctct

upper sequence: GLYMA20G30120.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0050g00800.t01 (Vitis vinifera), 5'ss of exon 2
TAAAGTGGTATATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttgattgatgtgtatctatgtacctcttgctctgtgt-cattctttttttcaaagaattttaaatgtttttgcatat---gctattcttgtttgttgt-----------------------------------------------------------------------
 |||||||| ||||| ||||| ||||||||||| |||||||||||| |||| ||||| || || ||||||||||||||||| || ||||||||||||||||| |  |   |  || | ||  |    ||      |  | | |  ||     ||||  || ||| ||   |  | ||   |||      ||| | | |   |||                                                                       
GAAAGTGGTTTATGCATCTCTGTTTGGGGTTGGGGCTCCTGAGGCTCTGGTTATTGGAGTGGTAGCTTTGTTGGTTTTTGGTCCCAAAGGTCTTGCTGAGgtaa--tctgtgtatatataattgaaaactgaagaccttatttgtatggaagttttagaaaaatgtttggttatcttaattattgaagcattttgggtgactgtaatgctggttgcagagacttagattctgtgttttgccttttagtatctttgtttttattatcttaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185172|gb|HO030385.1|HO030385
EST:     TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG                         GTTGCTCGAAATCTGGG
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGG
EST: gi|192311913|gb|FK004222.1|FK004222
EST:     AATTGGGGTCGTTGCTTTGTTGGTTTTTTGGCCCTAAAGGTCTTGCTGAG                         GTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
genomic: AATTGGGGTCGTTGCTTTGTTGG-TTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
EST: gi|15204816|gb|BI427584.1|BI427584
EST:     TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG                         GTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
EST: gi|151402645|gb|EV272458.1|EV272458
EST:     TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG                         GTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
EST: gi|192334065|gb|FK026222.1|FK026222
EST:     TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG                         GTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
EST: gi|19348858|gb|BM893390.1|BM893390
EST:     TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG                         GTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
EST: gi|208321091|gb|GE123862.1|GE123862
EST:     TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG                         GTTGCTCGAAATCTGGGAAAAACATTGCGTGC
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGC
EST: gi|192311912|gb|FK004221.1|FK004221
EST:     AATTGGGGTCGTTGCTTTGTTGGTTTTTTGGCCCTAAAGGTCTTGCTGAG                         GTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
genomic: AATTGGGGTCGTTGCTTTGTTGG-TTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
EST: gi|298179287|gb|HO027758.1|HO027758
EST:     GTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG                         GTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
genomic: GTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA