1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttataatgttttgcaaaacttttgttgttgttgctggtaatgatggtaatcctttttctttacttaaccccattggctttggttgagtcactgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGAGAGCTTCAG
species | Glycine max |
transcript | GLYMA20G30120.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG GTTGCTCGAAATCTGGGEST: gi|192311913|gb|FK004222.1|FK004222
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGG
EST: AATTGGGGTCGTTGCTTTGTTGGTTTTTTGGCCCTAAAGGTCTTGCTGAG GTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGAEST: gi|15204816|gb|BI427584.1|BI427584
genomic: AATTGGGGTCGTTGCTTTGTTGG-TTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
EST: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG GTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGAEST: gi|151402645|gb|EV272458.1|EV272458
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
EST: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG GTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGAEST: gi|192334065|gb|FK026222.1|FK026222
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
EST: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG GTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGAEST: gi|19348858|gb|BM893390.1|BM893390
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
EST: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG GTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGAEST: gi|208321091|gb|GE123862.1|GE123862
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
EST: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG GTTGCTCGAAATCTGGGAAAAACATTGCGTGCEST: gi|192311912|gb|FK004221.1|FK004221
genomic: TAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGC
EST: AATTGGGGTCGTTGCTTTGTTGGTTTTTTGGCCCTAAAGGTCTTGCTGAG GTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGAEST: gi|298179287|gb|HO027758.1|HO027758
genomic: AATTGGGGTCGTTGCTTTGTTGG-TTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
EST: GTTGGTTTTTGGCCCTAAAGGTCTTGCTGAG GTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
genomic: GTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGgtgagtttga ... ctgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGA
gtaatcctttttctttacttaaccccattggctttggttgagtcactgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGAGAGCTTCAG
acttaac putative branch site (score: 3)
tttttctttacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttataatgttttgcaaaacttttgttgttgttgctggtaatgatggtaatcctttttctttacttaaccccattggctttggttgagtcactgaatacagGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGAGAGCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - tgttttg
- - - - - - -caaaact
- - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - -gatggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctttgg