Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatttatattttctcatgctatgcaatttcctctgttttagattttagcttttagctgacacgttttatttttttgcctatgggatggtggaaatgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGACCCAAAGGATCCTTTTCGGGTTGATATGACTGATAAGCTTTTG

Basic information

species Glycine max
transcript GLYMA20G30110.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30110.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0083g00950.t01 (Vitis vinifera), 3'ss of exon 1
gtattatttatattttctcatgctatgcaatttcctctgttttagattttagcttttagctgacacgtt-ttatttttttgcctatgggatggtggaaatgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGACCCAAAGGATCCTTTTCGGGTTGATATGACTGATAAGCTTTTG
       | |     |||     | |   | ||  |  |||    ||| |   | |||  ||| |     ||| ||  ||   ||    || || |       ||||||||||| ||||| ||||  ||||| || ||| | || ||||| ||||| ||||||||||| |  |||||||| ||  |||| |||||||| | |||||||
-------tgacgaagtctaggtttctatgaattgtttagttaattattattattatta-ttgatagacagttaattaattaattaattaattgttgttggaaaaatagATATTCGGGTTTGTGCCGGATGGTGCAAAAGCTTGTGAACATTTTGAAGCAGATGGACCCGAGAGATCCTTTCCGAATTGAGATGACTGACATGCTTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207823913|gb|GD794588.1|GD794588
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACAATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193587868|gb|FK543491.1|FK543491
EST:     GGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: GGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208185877|gb|GD985386.1|GD985386
EST:     CGGGACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208178376|gb|GD978329.1|GD978329
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATAATGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|58019754|gb|CX706496.1|CX706496
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208244619|gb|GE038562.1|GE038562
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193414590|gb|FK379298.1|FK379298
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|192303434|gb|FG997464.1|FG997464
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193340553|gb|FK305850.1|FK305850
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|6725606|gb|AW310005.1|AW310005
EST:     GATTACATACA                         ATATTCAGGGTTTATTCCATATGGTTCAGAAGTTAGTAAACA-AATGAAAC
genomic: GATTACAAAAAgtattattta ... atgtgaatagATATTCA-GGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAAC
EST: gi|192303062|gb|FG994180.1|FG994180
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193332115|gb|FK302003.1|FK302003
EST:     GTTACTGGACGGGACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: GTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193544873|gb|FK501714.1|FK501714
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208318068|gb|GE116751.1|GE116751
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208106766|gb|GD902327.1|GD902327
EST:     CGGGACGTATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACG-ATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208196559|gb|GD989548.1|GD989548
EST:     ACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193464444|gb|FK430986.1|FK430986
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193497172|gb|FK462100.1|FK462100
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193552415|gb|FK509004.1|FK509004
EST:     CGGGACGATTACAAAAA                         ATAATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAAC
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagAT-ATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAAC
EST: gi|193395707|gb|FK362246.1|FK362246
EST:     CGGGACGA-TACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|207740598|gb|GD714746.1|GD714746
EST:     ACGATTACAAAAA                         ATATTCGGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193555314|gb|FK511013.1|FK511013
EST:     CGGGACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208333718|gb|GE132027.1|GE132027
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208044271|gb|GD838819.1|GD838819
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|207696473|gb|GD678594.1|GD678594
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208125791|gb|GD922025.1|GD922025
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208126274|gb|GD924720.1|GD924720
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|213589860|gb|DB969639.1|DB969639
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAA
EST: gi|193596888|gb|FK549134.1|FK549134
EST:     ACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208033721|gb|GD828216.1|GD828216
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|192303433|gb|FG997463.1|FG997463
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|192334205|gb|FK026586.1|FK026586
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTGCAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|5175569|gb|AI759902.1|AI759902
EST:     ACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|298174869|gb|HO014786.1|HO014786
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193350398|gb|FK317458.1|FK317458
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193460370|gb|FK426187.1|FK426187
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTG
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTG
EST: gi|208037786|gb|GD834484.1|GD834484
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|254315762|gb|GR825571.1|GR825571
EST:     CATTATGCAACGCTACCATG-TACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|58016200|gb|CX702942.1|CX702942
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208028797|gb|GD823237.1|GD823237
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208171399|gb|GD967974.1|GD967974
EST:     CGGGACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208118129|gb|GD920066.1|GD920066
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|254317398|gb|GR826343.1|GR826343
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|298198944|gb|HO042307.1|HO042307
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193595487|gb|FK554352.1|FK554352
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193468964|gb|FK433280.1|FK433280
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193722833|gb|FK657451.1|FK657451
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|13477459|gb|BG507339.1|BG507339
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208094480|gb|GD897033.1|GD897033
EST:     CGGGACGATTACAAAAA                         ANA-TCAGGTTTATGCCGTATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|192303063|gb|FG994181.1|FG994181
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|254315761|gb|GR825570.1|GR825570
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|207685991|gb|GD669911.1|GD669911
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|207787280|gb|GD758791.1|GD758791
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193569357|gb|FK527116.1|FK527116
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193423581|gb|FK387246.1|FK387246
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208210868|gb|GE013063.1|GE013063
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208183343|gb|GD984057.1|GD984057
EST:     CGGGACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208035153|gb|GD836393.1|GD836393
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193407829|gb|FK373149.1|FK373149
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208289560|gb|GE085867.1|GE085867
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193601759|gb|FK554788.1|FK554788
EST:     ACGATTAC-AAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193609674|gb|FK560674.1|FK560674
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|22932658|gb|BU549797.1|BU549797
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193496971|gb|FK459477.1|FK459477
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208237682|gb|GE032638.1|GE032638
EST:     ACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: ACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|208200904|gb|GD997367.1|GD997367
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193426090|gb|FK390391.1|FK390391
EST:     CGGGACGATTACAAAAA                         TTATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193517803|gb|FK475360.1|FK475360
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|58022797|gb|CX709538.1|CX709538
EST:     AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: AACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
EST: gi|193602247|gb|FK556214.1|FK556214
EST:     CGGGACGATTACAAAAA                         ATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA
genomic: CGGGACGATTACAAAAAgtattattta ... atgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttagctgacacgttttatttttttgcctatgggatggtggaaatgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGACCCAAAGGATCCTTTTCGGGTTGATATGACTGATAAGCTTTTG
     agctgac  putative branch site (score: 3)
            acgttttattttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattatttatattttctcatgctatgcaatttcctctgttttagattttagcttttagctgacacgttttatttttttgcctatgggatggtggaaatgtgaatagATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGACCCAAAGGATCCTTTTCGGGTTGATATGACTGATAAGCTTTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA