1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTCTTACGCCGTTCTTTGCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttctttcttttaccgtttttcagtgtctccttgcttcgctgaatcgcatcttctttcattcagttttatatgatgcactgatacaatacatgat...
species | Glycine max |
transcript | GLYMA20G30110.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TACGAAGGAAAGCAATTTACTG TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGEST: gi|192303062|gb|FG994180.1|FG994180
genomic: TACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTG TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGEST: gi|213589860|gb|DB969639.1|DB969639
genomic: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTG TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGEST: gi|192303433|gb|FG997463.1|FG997463
genomic: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTG TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGEST: gi|192334205|gb|FK026586.1|FK026586
genomic: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: AAGGAAAACATTTTACTG TGAAGAACAATGAGGAAGCTTAAGTTTCATGAAAAGAAGCTTTTGAAGAAGEST: gi|298174869|gb|HO014786.1|HO014786
genomic: AAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTG TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGEST: gi|58016200|gb|CX702942.1|CX702942
genomic: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: CGAAGGAAAGCAATTTACTG TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGEST: gi|254317398|gb|GR826343.1|GR826343
genomic: CGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: ATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTG TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGEST: gi|298198944|gb|HO042307.1|HO042307
genomic: ATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTG TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGEST: gi|13477459|gb|BG507339.1|BG507339
genomic: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: ATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTG TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGEST: gi|254315761|gb|GR825570.1|GR825570
genomic: ATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTG TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGEST: gi|58022797|gb|CX709538.1|CX709538
genomic: GCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
EST: CGAAGGAAAGCAATTTACTG TGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
genomic: CGAAGGAAAGCAATTTACTGgtatttttct ... ctgatgacagTGAAGAACAATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTTACGCCGTTCTTTGCCCTCATCTCTCTCTCGCCGGCGTCGCTACGAAGGAAAGCAATTTACTGgtatttttctttcttttaccgtttttcagtgtctccttgcttcgctgaatcgcatcttctttcattcagttttatatgatgcactgatacaatacatgat
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA