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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtctttctttttctttgtttgatgagtaaagatggtgctttgtttttgccacatttactgtcttttatgtgtataatattatgtattgcatcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACCACCAATCTTTTCCGGCATAACAGTGCAGTGAATG

Basic information

species Glycine max
transcript GLYMA20G30080.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394515|gb|EV264386.1|EV264386
EST:     CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
genomic: CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
EST: gi|14516408|gb|BI095080.1|BI095080
EST:     CAGAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
genomic: CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
EST: gi|19452661|gb|BM954071.1|BM954071
EST:     CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
genomic: CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
EST: gi|14205703|gb|BG839381.1|BG839381
EST:     CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
genomic: CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
EST: gi|31473948|gb|CD415976.1|CD415976
EST:     CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
genomic: CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
EST: gi|14206074|gb|BG839752.1|BG839752
EST:     AAAGCTTGCCAACATTTTAACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTTCTGCAAATTCTCTTCATCCAGGAACAATCAC
genomic: AAAGCTTGCCAACATTTT-ACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATA-TTTCTGCAAATTCTCTTCATCCAGGAACAATCAC
EST: gi|209715121|gb|BW677164.1|BW677164
EST:     CATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
genomic: CATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
EST: gi|22930059|gb|BU547198.1|BU547198
EST:     CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
genomic: CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
EST: gi|31471558|gb|CD413586.1|CD413586
EST:     CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTTATCCAGGAACAATCACC
genomic: CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
EST: gi|192319094|gb|FK010630.1|FK010630
EST:     CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG                         GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC
genomic: CAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgccacatttactgtcttttatgtgtataatattatgtattgcatcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACCACCAATCTTTTCCGGCATAACAGTGCAGTGAATG
               tcttttatgtgtataa  TA-rich tract