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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttatagacactgataagatacacactgatgcatgccctgcacttgtagctgatgtatctgctggggagcacggaataatagttcttgcatttggtaagtcatattctctttttaagTCTTTGAGAATGCATACCTGCATTGTTGTGAACTT

Basic information

species Glycine max
transcript GLYMA20G29970.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29970.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv16s0050g00600.t01 (Vitis vinifera), 3'ss of exon 8
--------------------------gttttatagacactga-taagatacacactgatgcatgccctgcacttgtagctgatgtatc----tgctggggagcacgga--ataatagttcttgcatttggtaagtcatattctctttttaagTCTTTGAGAATG-CATACCTGCATTGTTG-TGAACTT-------------------
                           | ||  ||  |||   | |   |   |   |||||  |  |  | ||  || || |  | |    ||||    |||| |     ||  |  | |    |||  ||    | ||        |||  | |   | ||| | | ||    | | || || |  |                   
gttaatttaacctgaacatttgttttatctttcagctacttcctcattcagttatgaatgca-actttaaattttgagttggttaaccattatgcttataagcagGTCCTGTACCAAGTTTCTGGTTTTATAG---ACATCGATAGCATAAACCCTGATGCATGGCCTGCCCTTGTGGCTGATGCATCTGCAGGAGAACAGGGAATAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggggagcacggaataatagttcttgcatttggtaagtcatattctctttttaagTCTTTGAGAATGCATACCTGCATTGTTGTGAACTT
                                     tcatattctcttttt  CT-rich tract
                                       atattctctttttaa  TA-rich tract