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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATCTCAAAGGTATATCCTGCCACGTACATAGACAATGTTACTGGGCATGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTGCACTCAAGgtcagtaggatatttgaagtttgtgttttaatactacagctggtcagtatgtatgactttcttctagcatatcatgtctatagaatatggatattacag

Basic information

species Glycine max
transcript GLYMA20G29970.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29970.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G23890.1 (Arabidopsis thaliana), 5'ss of exon 5
ACAATCTCAAAGGTATATCCTGCCACGTACATAGACAATGTTACTGGGCATGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTGCACTCAAGgtcagtaggatatttgaagtttgtgttttaatactacagctggtcagtatgtatgactttcttctagcatatcatgtctatagaatatggatattacag
|||| |||||| || |||||||| | ||| || || |||||||||| || ||| ||||||||||| || || || |||||||||||||||| || ||||||| ||   ||  |||||| ||||  || ||     | ||  | | |  |  |    ||   |||| |  ||   | |  |                   
ACAACCTCAAAAGTGTATCCTGCTATGTATATTGAGAATGTTACTGAGCTTGCTTTTGATGATATTACTCCCGAAGACCCTGATTTTTCTTCCATTCAAGgtgagagtgaactttgaattttg-attctacccgaaaagaagataaaca-atgaagctaaattct-gtttactcttttcag------------------

upper sequence: GLYMA20G29970.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G52410.1 (Arabidopsis thaliana), 5'ss of exon 6
ACAATCTCAAAGGTATATCCTGCCACGTACATAGACAATGTTACTGGGCATGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTGCACTCAAGgtcagta--ggatatttgaagtttgtgttttaatactacagctggtcag--tatgtatgactttcttctagcatatcatgtctatagaatatggatattacag
 ||   ||||| ||||||||||||| ||| ||||| ||||||||||  | ||||||||||||||| || ||||| || ||||||||| | | || ||||||| |  |  | || |||      |    | | |      |    || |   ||||| | |  | |||    ||| |    | |  | | ||| |         
TCAGCATCAAAAGTATATCCTGCCATGTATATAGAAAATGTTACTGAACTTGCATTTGATGATATTACACCTGAAGATCCTGATTTTCCATTCATTCAAGgtgatcatcgaattttttgtacattcactctgaagtctgaatcagtgaagttatgtttaatctgctttcttcatttttcat-tggatagtatag---------

upper sequence: GLYMA20G29970.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0050g00600.t01 (Vitis vinifera), 5'ss of exon 6
ACAATCTCAAAGGTATATCCTGCCACGTACATAGACAATGTTACTGGGCATGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTGCACTCAAGgtcagtag-gatatttgaagtttgtgttt---taatactacagctggtcagtat-------gtatgactttc-ttctagcatatcatg-----tctatagaatatggatattacag
||| | |||||||||||||| || | ||||||||  ||| ||||||  | ||||||||||||||| || ||||| |||||||||||||| | || ||||||| |  |  |||  |  |  |||| | ||   | ||  || ||   |    |||        |||| | ||  || |     || | |     |||    ||  ||||| || |||
ACAGTTTCAAAGGTATATCCAGCTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATTCAAGgtgataattgattctaaacttttgagcttcgatgatgatatagaaagatcctattgtttggatatgccctttgttttgttgcattaagagttttctcactaagttggatgtttcag