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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttggttatttcttcttcctctgattactatgtgaaataacaagatataaaaaagtttagctatttgctattattgtaatatgtggcgatatctgtgcctttctgattacctttttagGAAAACAATCTCAAAGGTATATCCTGCCACGTACATAGACAATGTTACTGGGCATGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTGCACT

Basic information

species Glycine max
transcript GLYMA20G29970.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29970.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G23890.1 (Arabidopsis thaliana), 3'ss of exon 4
gtagttggttatttcttcttcctctgattactatgtgaaataacaagatataaaaaagtttagctatttgctattat-tgtaatatgtggcgatatctgtgcctttctgattacctttttagGAAAACAATCTCAAAGGTATATCCTGCCACGTACATAGACAATGTTACTGGGCATGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTGCACT
         |||   ||| |  | |  ||| | | |    |     | |  |||| |   |   ||| |  ||  |  || |||   ||    ||| ||||  | | | | |  ||||  || || |||| |||||| || |||||||| | ||| || || |||||||||| || ||| ||||||||||| || || || |||||||||||||||| || |
--------gtatactttcatgattttgttagtgtttc---tggtggggt-caaaatatccttcgtatgtattagaaagtgaaattcatgcatttatgtgtgt-tctttaact--ctttgcagAAACACAACCTCAAAAGTGTATCCTGCTATGTATATTGAGAATGTTACTGAGCTTGCTTTTGATGATATTACTCCCGAAGACCCTGATTTTTCTTCCATT

upper sequence: GLYMA20G29970.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G52410.1 (Arabidopsis thaliana), 3'ss of exon 5
gtagttggttatttcttcttcctctgattactatgtgaaataa--caagatataaaaaagtttagctatttgctattattgtaatatgtggcgatatctgtgcctttctgattacctttttagGAAAACAATCTCAAAGGTATATCCTGCCACGTACATAGACAATGTTACTGGGCATGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTGCACT
                        | | ||  |    |  |    |    | |  |||  ||  |  || |   | |    ||  | |||   ||||||     |   || |||      ||||||  ||   ||||| ||||||||||||| ||| ||||| ||||||||||  | ||||||||||||||| || ||||| || ||||||||| | | || |
-----------------------gtaactatcaaaaaatctctttcctactcttgaaacattgtgaaatatttcactgccttacaacgtgaaaatatct-----tcattggtta------tagGAACTCAGCATCAAAAGTATATCCTGCCATGTATATAGAAAATGTTACTGAACTTGCATTTGATGATATTACACCTGAAGATCCTGATTTTCCATTCATT

upper sequence: GLYMA20G29970.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv16s0050g00600.t01 (Vitis vinifera), 3'ss of exon 5
gtagttggttatttcttcttcctctgattactatgtgaaataacaagatataaaaaagtttagctatttgctattattgtaatatgtggcgatatctgtgcctttctgattacctttttagGAAAACAATCTCAAAGGTATATCCTGCCACGTACATAGACAATGTTACTGGGCATGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTGCACT
         | |  ||| |       || |  || ||||        | |||||    || |   ||| | | ||    ||| |||||    ||    |  || ||   |   | || |||||| ||| | |||||||||||||| || | ||||||||  ||| ||||||  | ||||||||||||||| || ||||| |||||||||||||| | || |
--------ctgtagcttgtagagtgcatcagcatctgaaggctaccaacataaa----ttca--cattggatgttg--ataacatgtgat--taataatttctatccatt---ccttgtagGAATACAGTTTCAAAGGTATATCCAGCTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgctattattgtaatatgtggcgatatctgtgcctttctgattacctttttagGAAAACAATCTCAAAGGTATATCCTGCCACGTACATAGACAATGTTACTGGGCATGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTGCACT
                                     ttctgat  putative branch site (score: 3)
                                           ttaccttttt  CT-rich tract
     tattattgtaatatgt  TA-rich tract