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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTGCAGTCAATGGGGCTATCAATAGAAgtaagtctttcaacaagaaactagatttaatttccttttttgttgttgtttaggatattatttgtatatcgtgtatatctattatgttctcaaatacact...

Basic information

species Glycine max
transcript GLYMA20G29820.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193479708|gb|FK448189.1|FK448189
EST:     GTGCTTGCAGTCAATGGGGCTATCAATAGAA                         CAG---TGGAAGCTCGAAGAGAGC
genomic: GTGCTTGCAGTCAATGGGGCTATCAATAGAAgtaagtcttt ... catcttgtagCAGCAGTGGAAGCTCGAAGAGAGC
EST: gi|11689795|gb|BF597471.1|BF597471
EST:     GTTGCTTGCAGTCAATGGGGCTATCAATAGAA                         CAGCAGTGGAAGCTCGAAGAGAGCTCTTGCCGAGGTTTAATATGTGAGCAG
genomic: GT-GCTTGCAGTCAATGGGGCTATCAATAGAAgtaagtcttt ... catcttgtagCAGCAGTGGAAGCTCGAAGAGAGCTCTTGCCGAGGTTTAATATGTGAGCAG
EST: gi|51343595|gb|CO984328.1|CO984328
EST:     GTGCTTGCAGTCAATGGGGCTATCAATAGAA                         CAG---TGGAAGCTCGAAGAGAGCTCTTGCCGAGGTTTAATATGTGAGCAG
genomic: GTGCTTGCAGTCAATGGGGCTATCAATAGAAgtaagtcttt ... catcttgtagCAGCAGTGGAAGCTCGAAGAGAGCTCTTGCCGAGGTTTAATATGTGAGCAG
EST: gi|193528423|gb|FK483953.1|FK483953
EST:     GTGCTTGCAGTCAATGGGGCTATCAATAGAA                         CAG---TGGAAGCTCGAAGAGAGC
genomic: GTGCTTGCAGTCAATGGGGCTATCAATAGAAgtaagtcttt ... catcttgtagCAGCAGTGGAAGCTCGAAGAGAGC
EST: gi|208326330|gb|GE120712.1|GE120712
EST:     GTGCTTGCAGTCAATGGGGCTATCAATAGAA                         CAG---TGGAAGCTCGAAGAGAGCTCTTGCCGAGGTTTAATATGTGAGCAG
genomic: GTGCTTGCAGTCAATGGGGCTATCAATAGAAgtaagtcttt ... catcttgtagCAGCAGTGGAAGCTCGAAGAGAGCTCTTGCCGAGGTTTAATATGTGAGCAG