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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtttttttttctttctattattttgattttaaagaattgtcacattggtttttattttttcctggaacctttgtatatgtattgatacttttgattcgttatcctagctttttcccagttatgctaagcctaatcttttcatacaatttgtattccttagGTGCTTGCAGTCAATGGGGCTATCAATAGAA

Basic information

species Glycine max
transcript GLYMA20G29820.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193479708|gb|FK448189.1|FK448189
EST:     GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAG                         GTGCTTGCAGTCAATGGGGCTATCAATAGAA
genomic: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAGgtgttttttt ... tattccttagGTGCTTGCAGTCAATGGGGCTATCAATAGAA
EST: gi|11689795|gb|BF597471.1|BF597471
EST:     GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAG                         GTTGCTTGCAGTCAATGGGGCTATCAATAGAA
genomic: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAGgtgttttttt ... tattccttagGT-GCTTGCAGTCAATGGGGCTATCAATAGAA
EST: gi|51343595|gb|CO984328.1|CO984328
EST:     GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAG                         GTGCTTGCAGTCAATGGGGCTATCAATAGAA
genomic: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAGgtgttttttt ... tattccttagGTGCTTGCAGTCAATGGGGCTATCAATAGAA
EST: gi|193528423|gb|FK483953.1|FK483953
EST:     GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAG                         GTGCTTGCAGTCAATGGGGCTATCAATAGAA
genomic: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAGgtgttttttt ... tattccttagGTGCTTGCAGTCAATGGGGCTATCAATAGAA
EST: gi|208326330|gb|GE120712.1|GE120712
EST:     GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAG                         GTGCTTGCAGTCAATGGGGCTATCAATAGAA
genomic: GACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAGgtgttttttt ... tattccttagGTGCTTGCAGTCAATGGGGCTATCAATAGAA
EST: gi|207783914|gb|GD756894.1|GD756894
EST:     ACACTTCAGCTATAACTGTCCTCAAAAATGGTCATGGAATTGATCCAAAG                         GTGACTTGCAGTCAA
genomic: ACACTTCAGCTATAACTGTCCTCAAAA-TGGTCATGGAATTGATCCAAAGgtgttttttt ... tattccttagGTG-CTTGCAGTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctttttcccagttatgctaagcctaatcttttcatacaatttgtattccttagGTGCTTGCAGTCAATGGGGCTATCAATAGAA
                      gcctaat  putative branch site (score: 3)
                                             tattcctt  putative PPT
                              ttttcatacaattt  TA-rich tract