Sequence
atgc intronic sequence ATGC exonic sequencegtaagacattgtaagactgtaaataggaatttttgctcaaactttcacttgcttggtaacgattaacattaatacaaatttgaatttttttcccctagGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAATTGCTGGCACCCAGTTCTGATGCCACAATGCCTACATTCTCTCATTCA
Basic information
species | Glycine max |
transcript | GLYMA20G29590.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G29590.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 8
gtaagacattgtaagactgtaaataggaatt-tttgctcaaactttcact-----------tgcttggtaacgattaacattaatacaaatttgaatttttttcccct---agGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAATTGCTGGCACCCAGTTCTGATGCCACAATGCCTACATTCTCTCATTCA
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gtatgatcctgcagatggatggtcttctgttgtttgcttctgtgttcattcatgtagctaatgttttgttgctgtaggtgacattactaattgaaatctgcataacttttcagGTGGCTGCCTCTTGATGTTGCCAGAATGTGGGGCCGTCATTGGCTTGAACCATTGCTGGCACCCAATTCTGATTCAATAATACCAGTGTTTCCTCCTTCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208186763|gb|GD981727.1|GD981727EST: ATCCTTGTTGCACACGGTGCAAGTCGGCTGGCTTTAAATTGCAATGG GTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACA
genomic: ATCCTTGTTGCACACGGTGCAAGTCGGCTGGCTTTAAATTGCAATGGgtaagacatt ... tttcccctagGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcacttgcttggtaacgattaacattaatacaaatttgaatttttttcccctagGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAATTGCTGGCACCCAGTTCTGATGCCACAATGCCTACATTCTCTCATTCA
tttttttcccct CT-rich tract
taacgattaacattaa TA-rich tract