Sequence
atgc intronic sequence ATGC exonic sequence...tcaatggatctgatgtcaattcaatagaagcatgataacatgaagctttattagctatactaatttgataatatggtttgcattgatccttgatttgaagACCGCATTGATGCAAGCTTGTAGATATGGGCATTGGGAGGTTGCACAGACACTTTTACTCTTCAGATGCAAT
Basic information
species | Glycine max |
transcript | GLYMA20G29590.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G29590.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G07270.1 (Arabidopsis thaliana), 3'ss of exon 2
tcaatggatctgatgtcaattcaatagaagcatgataacatgaagctt-tattagctatactaa--tttgataatatg----gtttgcattgatccttgatttgaagACCGCATTGATGCAAGCTTGTAGATATGGGCATTGGGAGGTTGCACAGACACTTTTACTCTTCAGATGCAAT
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---tgaaatctgacttagatt--actaatggttacaaattcgattcctacactgaatctattaaaatccaggaatatgctaagtttgcaattaatcatgtttc--agACAGCATTGATGCAAGCTTGTAGATACGGACATTGGGAAGTTGTGCAAACTCTTCTGCTTTTCCGATGCAAT
upper sequence: GLYMA20G29590.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 3
---tcaatggatctgat-gtcaattcaatagaagcatgataacatgaagctttattagctatactaatttgataatatggtttgcattgatccttg-atttgaagACCGCATTGATGCAAGCTTGTAGATATGGGCATTGGGAGGTTGCACAGACACTTTTACTCTTCAGATGCAAT
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cgtagaaataatctgattgtcttctttttagagcaaagaattgatggatctgtgttgaat---ctgatt--gtggactggtttttgtttgtaattgtatttgaagACGGCATTGATGCAAGCTTGTAGATATGGGCATTGGGAAGTTGTTCAGACTCTACTGCTCTTCAGATGCAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120492754|gb|EH220921.1|EH220921EST: TGTTGCTGGAGAATGGAGCTGATGTGAATTCCAGAAATTATTGTGGCCAG ACCGCATTGATGCAAGCTTGTAGATATGGGCATTGGGAGGTTGCACAGACA
genomic: TGTTGCTGGAGAATGGAGCTGATGTGAATTCCAGAAATTATTGTGGCCAGgttagacttt ... tgatttgaagACCGCATTGATGCAAGCTTGTAGATATGGGCATTGGGAGGTTGCACAGACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttattagctatactaatttgataatatggtttgcattgatccttgatttgaagACCGCATTGATGCAAGCTTGTAGATATGGGCATTGGGAGGTTGCACAGACACTTTTACTCTTCAGATGCAAT
tcctt CT-rich tract
tatactaatttgataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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tcaatggatctgatgtcaattcaatagaagcatgataacatgaagctttattagctatactaatttgataatatggtttgcattgatccttgatttgaagACCGCATTGATGCAAGCTTGTAGATATGGGCATTGGGAGGTTGCACAGACACTTTTACTCTTCAGATGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG