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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagaattgctttagttttgattgtgatataccttatggtcatttctttttgaaactggaaataatgttattctttatcagATCCTTGTTGCACACGGTGCAAGTCGGCTGGCTTTAAATTGCAATGG

Basic information

species Glycine max
transcript GLYMA20G29590.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208186763|gb|GD981727.1|GD981727
EST:     TGGAGGCAATTTAAAATTGTTGTCAG                         ATCCTTGTTGCACACGGTGCAAGTCGGCTGGCTTTAAATTGCAATGG
genomic: TGGAGGCAATTTAAAA-TGTTGTCAGgcaagaattg ... tctttatcagATCCTTGTTGCACACGGTGCAAGTCGGCTGGCTTTAAATTGCAATGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atataccttatggtcatttctttttgaaactggaaataatgttattctttatcagATCCTTGTTGCACACGGTGCAAGTCGGCTGGCTTTAAATTGCAATGG
                                         ttattcttt  CT-rich tract
                                 aaataatgttattctt  TA-rich tract