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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACAATGGTTATGGAGGGAGCCCAAATAATATGCCTGATCCCAGGGACAGTCCCAACTATGGCGGTCCTGAAAGTCCCATGCATGAAAGATACCGCAGgtttgcaaacatctaactatttcttagagtttgttattcctgtttattttcttcagccttctgtaatcttcattgttttaattgtgttcatttttgataatgtag

Basic information

species Glycine max
transcript GLYMA20G29460.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208025874|gb|GD826680.1|GD826680
EST:     AAGTCCCATGCATGAAAGATACCACAG                         CCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGGA
genomic: AAGTCCCATGCATGAAAGATACCGCAGgtttgcaaac ... gataatgtagCCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGGA
EST: gi|208329190|gb|GE131230.1|GE131230
EST:     GGTCCTGAAAGTCCCATGCATGAAAGATACCGCAG                         CCAGTCACCCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGG
genomic: GGTCCTGAAAGTCCCATGCATGAAAGATACCGCAGgtttgcaaac ... gataatgtagCCAGTCA-CCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGG
EST: gi|209705493|gb|BW668071.1|BW668071
EST:     AGTCCCAACTATGGCGGTCCTGAAAGTCCCATGCATGAAAGATACCGCAG                         CCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGGA
genomic: AGTCCCAACTATGGCGGTCCTGAAAGTCCCATGCATGAAAGATACCGCAGgtttgcaaac ... gataatgtagCCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGGA
EST: gi|254329146|gb|GR833518.1|GR833518
EST:     AGTCCCAACTATGGCGGTCCTGAAAGTCCCATGCATGAAAGATACCGCAG                         CCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGGA
genomic: AGTCCCAACTATGGCGGTCCTGAAAGTCCCATGCATGAAAGATACCGCAGgtttgcaaac ... gataatgtagCCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGGA
EST: gi|22927412|gb|BU544551.1|BU544551
EST:     AGTCCCAACTATGGCGGTCCTGAAAGTCCCATGCATGAAAGATACCGCAG                         CCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAG---CCGGA
genomic: AGTCCCAACTATGGCGGTCCTGAAAGTCCCATGCATGAAAGATACCGCAGgtttgcaaac ... gataatgtagCCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGGA
EST: gi|208326938|gb|GE123686.1|GE123686
EST:     AGTCCCAACTATGGCGGTCCTGAAAGTCCCATGCATGAAAGATACCGCAG                         CCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGGA
genomic: AGTCCCAACTATGGCGGTCCTGAAAGTCCCATGCATGAAAGATACCGCAGgtttgcaaac ... gataatgtagCCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGGA
EST: gi|163922750|gb|EH038752.1|EH038752
EST:     AGTCCCAACTATGGCGGTCCTGAAAGTCCCATGCATGAAAGATACCGCAG                         CCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGGA
genomic: AGTCCCAACTATGGCGGTCCTGAAAGTCCCATGCATGAAAGATACCGCAGgtttgcaaac ... gataatgtagCCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGGA
EST: gi|207708026|gb|GD690800.1|GD690800
EST:     CATGAAAGATACCGCAG                         CCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGGA
genomic: CATGAAAGATACCGCAGgtttgcaaac ... gataatgtagCCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGGA
EST: gi|6454598|gb|AW185281.1|AW185281
EST:     AGTCCCAACTATGGCGGTCCTGAAAGTCCCATGCATGAAAGATACCGCAG                         CCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAG
genomic: AGTCCCAACTATGGCGGTCCTGAAAGTCCCATGCATGAAAGATACCGCAGgtttgcaaac ... gataatgtagCCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAG
EST: gi|207713367|gb|GD696750.1|GD696750
EST:     GGTCCTGAAAGTCCCATGCATGAAAGATACCGCAG                         CCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGGA
genomic: GGTCCTGAAAGTCCCATGCATGAAAGATACCGCAGgtttgcaaac ... gataatgtagCCAGTCACCCCCTGCAGAAGAATGATTGCAGTCTTTGATGAAGAAGCCGGA