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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTTGTCTTGGTCAACACCAAAAATATCTGTTGCTCTCTACTCTGCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAGgtgatccatcgttctcggattccttcaattcccatcttcaattttcatctttcatctctgtttttcattcgaaatttgttcttttcgcttctttttcaac...

Basic information

species Glycine max
transcript GLYMA20G29460.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6454368|gb|AW185051.1|AW185051
EST:     GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAG                         GGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGT
genomic: GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAGgtgatccatc ... ttgtgttcagGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGT
EST: gi|209705492|gb|BW668070.1|BW668070
EST:     GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAG                         GGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGT
genomic: GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAGgtgatccatc ... ttgtgttcagGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGT
EST: gi|298175607|gb|HO015126.1|HO015126
EST:     GCTTAGGGTTCCAACTTCCAACCCAACGCTTATCGTTCTCATGCAACAAG                         GGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGT
genomic: GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAGgtgatccatc ... ttgtgttcagGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGT
EST: gi|9986286|gb|BE660394.1|BE660394
EST:     GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAG                         GGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGT
genomic: GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAGgtgatccatc ... ttgtgttcagGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGT
EST: gi|7796093|gb|AW781490.1|AW781490
EST:     GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAG                         GGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGT
genomic: GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAGgtgatccatc ... ttgtgttcagGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGT