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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATATGGAAGACGAGAGAGATGCTGAGGCTGCTATTCGTGCTCTTGATCGAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAGgtaacacatcattagtctttttctattagaatgttgttttcatccattatgttttcttcatcattacacatttacatatactttgttgcag

Basic information

species Glycine max
transcript GLYMA20G29460.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254329145|gb|GR833517.1|GR833517
EST:     GAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAG                         CATGAACGTGGTGTTAGAAAGCCTGCTAGTTCAAGAAGATCTTCAGCTAAT
genomic: GAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAGgtaacacatc ... tttgttgcagCATGAACGTGGTGTTAGAAAGCCTGCTAGTTCAAGAAGATCTTCAGCTAAT
EST: gi|6454368|gb|AW185051.1|AW185051
EST:     GAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAG                         CATGAACGTGGTGTTAGAAAGCCTGCTAGTTCAAGAAGATCTTCAGCTAAT
genomic: GAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAGgtaacacatc ... tttgttgcagCATGAACGTGGTGTTAGAAAGCCTGCTAGTTCAAGAAGATCTTCAGCTAAT
EST: gi|209705492|gb|BW668070.1|BW668070
EST:     GAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAG                         CATGAACGTGGTGTTAGAAAGCCTGCTAGTTCAAGAAGATCTTCAGCTAAT
genomic: GAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAGgtaacacatc ... tttgttgcagCATGAACGTGGTGTTAGAAAGCCTGCTAGTTCAAGAAGATCTTCAGCTAAT
EST: gi|298175607|gb|HO015126.1|HO015126
EST:     GAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAG                         CATGAACGTGGTGTTAGAAAGCCTGCTAGTTCAAGAAGATCTTCAGCTAAT
genomic: GAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAGgtaacacatc ... tttgttgcagCATGAACGTGGTGTTAGAAAGCCTGCTAGTTCAAGAAGATCTTCAGCTAAT
EST: gi|9986286|gb|BE660394.1|BE660394
EST:     GAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAG                         CATGAACGTGGTGTTAGAAAGCCTGCTAGTTCAAGAAGATCTTCAGCTAAT
genomic: GAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAGgtaacacatc ... tttgttgcagCATGAACGTGGTGTTAGAAAGCCTGCTAGTTCAAGAAGATCTTCAGCTAAT
EST: gi|7796093|gb|AW781490.1|AW781490
EST:     GAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAG                         CATGAACGTGGTGTTAGAAAGCCTGCTAGTTCAAGAAGATCTTCAGCTAAT
genomic: GAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAGgtaacacatc ... tttgttgcagCATGAACGTGGTGTTAGAAAGCCTGCTAGTTCAAGAAGATCTTCAGCTAAT